Feature Requests item #1017642, was opened at 2004-08-27 09:46 Message generated for change (Settings changed) made by hansonr You can respond by visiting: https://sourceforge.net/tracker/?func=detail&atid=379136&aid=1017642&group_id=23629
Please note that this message will contain a full copy of the comment thread, including the initial issue submission, for this request, not just the latest update. Category: None Group: None >Status: Closed Priority: 5 Submitted By: Miguel (migueljmol) Assigned to: Nobody/Anonymous (nobody) Summary: large memory requirements Initial Comment: Jan says that Jmol requires a lot of memory: ---------------------------- Original Message ---------------------------- Subject: Re: [Jmol-developers] memory requirements From: "Jan Reichert" <[EMAIL PROTECTED]> Date: Fri, August 27, 2004 8:29 To: [email protected] -------------------------------------------------------------------------- [snip] >>and while RasMol need 90 MB for a very big biological unit (40 MB PDB >> >> >file) I need >java -Xmx512m -jar Jmol.jar 1f8v.pdb1 >Jan, 1F8V from the PDB is less than 800K uncompressed. > > yes, but the biological relevant unit ftp://ndbserver.rutgers.edu/NDB/coordinates/na-biol/1f8v.pdb1 contains 60 models of this asymmetric unit PDB file. On Linux (other performance is good:-) it uses 348 MB RSS (on IRIX, if I remember right, about 480, and on XP the overall performance is unusable) >And the file from scop cannot require 512Mb or it would not work in the Java Plug-in applet environment. ---------------------------------------------------------------------- Comment By: Egon Willighagen (egonw) Date: 2004-08-29 11:10 Message: Logged In: YES user_id=25678 Miguel, I think you posted something about don't having a tool to see memory usage... Please check out JMP... I've used the program some time ago, and it looked usefull... the amount of information you get can be overwhelming, so you can do selections on certain java packages...: http://www.khelekore.org/jmp/ ---------------------------------------------------------------------- You can respond by visiting: https://sourceforge.net/tracker/?func=detail&atid=379136&aid=1017642&group_id=23629 ------------------------------------------------------------------------- Using Tomcat but need to do more? Need to support web services, security? Get stuff done quickly with pre-integrated technology to make your job easier Download IBM WebSphere Application Server v.1.0.1 based on Apache Geronimo http://sel.as-us.falkag.net/sel?cmd=lnk&kid=120709&bid=263057&dat=121642 _______________________________________________ Jmol-developers mailing list [email protected] https://lists.sourceforge.net/lists/listinfo/jmol-developers
