On Thursday 31 August 2006 01:48, Bob Hanson wrote:
> OK, I'm lost. Here's what I tried:
>
> commit -m "10.9.50    11.0 beta  hydrogen bonding update
>
> modifying hydrogen bond routine to more appropriately represent hydrogen
> bonds.
>
> " C:/jmol-dev/workspace/Jmol-v10_9/src/org/jmol/viewer/AminoPolymer.java
> C:/jmol-dev/workspace/Jmol-v10_9/src/org/jmol/viewer/Frame.java
> C:/jmol-dev/workspace/Jmol-v10_9/src/org/jmol/viewer/JmolConstants.java
>     Sending        src/org/jmol/viewer/AminoPolymer.java
>     Sending        src/org/jmol/viewer/Frame.java
>     Merge conflict during commit
> svn: Commit failed (details follow):
> svn: Your file or directory 'Frame.java' is probably out-of-date
> svn: The version resource does not correspond to the resource within the
> transaction.  Either the requested version resource is out of date
> (needs to be updated), or the requested version resource is newer than
> the transaction root (restart the commit).

Indeed an update required. We are supposed to do that before every commit.

> (OK, that's because Nico changed Frame.java.)

I'm guessing that to be due to this commit:

[2006-08-30 22:34:25] <CIA-12> nicove * 
r5453 /branches/v10_9/Jmol/src/org/jmol/ (19 files in 3 dirs):
[2006-08-30 22:34:25] <CIA-12> Reapplying r5072:
[2006-08-30 22:34:25] <CIA-12> Introduced Point3fi class which includeds 
members for screen coordinates.
[2006-08-30 22:34:25] <CIA-12> Atom derives from Point3fi.
[2006-08-30 22:34:25] <CIA-12> At atom can now be treated like a Point3f, so 
there are a number of places
[2006-08-30 22:34:25] <CIA-12> in the code that can probably be simplified 
because we don't have to
[2006-08-30 22:34:27] <CIA-12> call a method to ask an atom for its Point3f.

> (At this point I did an update, which really broke my system, since
> there are places where you cannot just take out ".point3f" and have it
> work. As far as I could tell.)

Taking out the .point3d *is*, I think, the point of commit r5072, reapplied as 
r5453.

> revert -N
> C:/jmol-dev/workspace/Jmol-v10_9/src/org/jmol/viewer/JmolConstants.java
>     Reverted
> C:/jmol-dev/workspace/Jmol-v10_9/src/org/jmol/viewer/JmolConstants.java
> update -r HEAD -N
> C:/jmol-dev/workspace/Jmol-v10_9/src/org/jmol/viewer/JmolConstants.java
>     U
> C:/jmol-dev/workspace/Jmol-v10_9/src/org/jmol/viewer/JmolConstants.java
>     Updated to revision 5454.
>     ===== File Statistics: =====
>     Updated: 1
> revert -N C:/jmol-dev/workspace/Jmol-v10_9/src/org/jmol/viewer/Frame.java
>     Reverted
> C:/jmol-dev/workspace/Jmol-v10_9/src/org/jmol/viewer/Frame.java update -r
> HEAD C:/jmol-dev/workspace/Jmol-v10_9/src/org/jmol/viewer U 
> C:/jmol-dev/workspace/Jmol-v10_9/src/org/jmol/viewer/Atom.java U 
> C:/jmol-dev/workspace/Jmol-v10_9/src/org/jmol/viewer/Sticks.java U 
> C:/jmol-dev/workspace/Jmol-v10_9/src/org/jmol/viewer/LcaoCartoon.java U
> C:/jmol-dev/workspace/Jmol-v10_9/src/org/jmol/viewer/MeasuresRenderer.java
>     U  C:/jmol-dev/workspace/Jmol-v10_9/src/org/jmol/viewer/Polyhedra.java
>     U  C:/jmol-dev/workspace/Jmol-v10_9/src/org/jmol/viewer/Polymer.java
>     U  C:/jmol-dev/workspace/Jmol-v10_9/src/org/jmol/viewer/Isosurface.java
>     U  C:/jmol-dev/workspace/Jmol-v10_9/src/org/jmol/viewer/Dots.java
>     U  C:/jmol-dev/workspace/Jmol-v10_9/src/org/jmol/viewer/Monomer.java
>     U
> C:/jmol-dev/workspace/Jmol-v10_9/src/org/jmol/viewer/VectorsRenderer.java
>     U  C:/jmol-dev/workspace/Jmol-v10_9/src/org/jmol/viewer/Bond.java
>     U
> C:/jmol-dev/workspace/Jmol-v10_9/src/org/jmol/viewer/CompoundDocument.java
>     U  C:/jmol-dev/workspace/Jmol-v10_9/src/org/jmol/viewer/Dipole.java
>     U
> C:/jmol-dev/workspace/Jmol-v10_9/src/org/jmol/viewer/FrameRenderer.java
>     U
> C:/jmol-dev/workspace/Jmol-v10_9/src/org/jmol/viewer/NucleicPolymer.java
>     U
> C:/jmol-dev/workspace/Jmol-v10_9/src/org/jmol/viewer/NucleicMonomer.java
>     U  C:/jmol-dev/workspace/Jmol-v10_9/src/org/jmol/viewer/Frame.java
>     U
> C:/jmol-dev/workspace/Jmol-v10_9/src/org/jmol/viewer/ModelManager.java
>     Updated to revision 5454.
>     ===== File Statistics: =====
>     Updated: 18
>     RA layer request failed
> svn: PROPFIND request failed on '/svnroot/jmol/branches/v10_9/Jmol/src/org'
> svn: PROPFIND of '/svnroot/jmol/branches/v10_9/Jmol/src/org': could not
> connect to server (https://svn.sourceforge.net)

I reported these problems with SourceForge, and they have similar problems. It 
seems synchronisation problems, back I don't think the know how to solve it 
yet :(

> (so there's a problem of some sort.)

See: 
https://sourceforge.net/tracker/?func=detail&atid=200001&aid=1544383&group_id=1

> commit -m "10.9.50    11.0 beta  hydrogen bonding update
>
> modifying hydrogen bond routine to more appropriately represent hydrogen
> bonds.
>
> " C:/jmol-dev/workspace/Jmol-v10_9/src/org/jmol/viewer/AminoPolymer.java
>     Sending        src/org/jmol/viewer/AminoPolymer.java
>     Transmitting file data ...
>     RA layer request failed
> svn: Commit failed (details follow):
> svn: MERGE request failed on
> '/svnroot/jmol/branches/v10_9/Jmol/src/org/jmol/viewer'
> svn: MERGE of '/svnroot/jmol/branches/v10_9/Jmol/src/org/jmol/viewer':
> 500 Internal Server Error (https://svn.sourceforge.net)

OK, see bug report. Even though your local checkout fails to note that the 
commit worked, the commit *did* work in these cases. The IRC transcript of 
the above commit:

[2006-08-31 01:23:45] <CIA-12> hansonr * 
r5455 /branches/v10_9/Jmol/src/org/jmol/viewer/AminoPolymer.java:
[2006-08-31 01:23:45] <CIA-12> 10.9.50 11.0 beta hydrogen bonding update
[2006-08-31 01:23:45] <CIA-12> modifying hydrogen bond routine to more 
appropriately represent hydrogen bonds.

(as sort of proof :)

> switch
> https://svn.sourceforge.net/svnroot/jmol/branches/v10_9/Jmol/src/org/jmol/v
>iewer C:/jmol-dev/workspace/Jmol-v10_9/src/org/jmol/viewer -r5446
>     U  C:/jmol-dev/workspace/Jmol-v10_9/src/org/jmol/viewer/Atom.java
>     U  C:/jmol-dev/workspace/Jmol-v10_9/src/org/jmol/viewer/Sticks.java
>     U 
> C:/jmol-dev/workspace/Jmol-v10_9/src/org/jmol/viewer/LcaoCartoon.java U
> C:/jmol-dev/workspace/Jmol-v10_9/src/org/jmol/viewer/MeasuresRenderer.java
>     U  C:/jmol-dev/workspace/Jmol-v10_9/src/org/jmol/viewer/Polyhedra.java
>     U  C:/jmol-dev/workspace/Jmol-v10_9/src/org/jmol/viewer/Polymer.java
>     U  C:/jmol-dev/workspace/Jmol-v10_9/src/org/jmol/viewer/Isosurface.java
>     U  C:/jmol-dev/workspace/Jmol-v10_9/src/org/jmol/viewer/Dots.java
>     U  C:/jmol-dev/workspace/Jmol-v10_9/src/org/jmol/viewer/Monomer.java
>     U
> C:/jmol-dev/workspace/Jmol-v10_9/src/org/jmol/viewer/VectorsRenderer.java
>     U  C:/jmol-dev/workspace/Jmol-v10_9/src/org/jmol/viewer/Bond.java
>     U  C:/jmol-dev/workspace/Jmol-v10_9/src/org/jmol/viewer/Dipole.java
>     U
> C:/jmol-dev/workspace/Jmol-v10_9/src/org/jmol/viewer/NucleicPolymer.java
>     U
> C:/jmol-dev/workspace/Jmol-v10_9/src/org/jmol/viewer/NucleicMonomer.java
>     U  C:/jmol-dev/workspace/Jmol-v10_9/src/org/jmol/viewer/Frame.java
>     U
> C:/jmol-dev/workspace/Jmol-v10_9/src/org/jmol/viewer/ModelManager.java
>     Updated to revision 5446.
>     ===== File Statistics: =====
>     Updated: 16
> update -r HEAD C:/jmol-dev/workspace/Jmol-v10_9/src/org/jmol/util
>     U  C:/jmol-dev/workspace/Jmol-v10_9/src/org/jmol/util/Logger.java
>     U
> C:/jmol-dev/workspace/Jmol-v10_9/src/org/jmol/util/LoggerInterface.java
>     U 
> C:/jmol-dev/workspace/Jmol-v10_9/src/org/jmol/util/DefaultLogger.java
> Updated to revision 5455.
>     ===== File Statistics: =====
>     Updated: 3
> commit -m "10.9.50    11.0 beta  hydrogen bonding update
>
> modifying hydrogen bond routine to more appropriately represent hydrogen
> bonds.
>
> " C:/jmol-dev/workspace/Jmol-v10_9/src/org/jmol/viewer/AminoPolymer.java
>     Sending        src/org/jmol/viewer/AminoPolymer.java
>     Merge conflict during commit
> svn: Commit failed (details follow):
> svn: Your file or directory 'AminoPolymer.java' is probably out-of-date
> svn: The version resource does not correspond to the resource within the
> transaction.  Either the requested version resource is out of date
> (needs to be updated), or the requested version resource is newer than
> the transaction root (restart the commit).
>
> revert -N
> C:/jmol-dev/workspace/Jmol-v10_9/src/org/jmol/viewer/AminoPolymer.java
>     Reverted
> C:/jmol-dev/workspace/Jmol-v10_9/src/org/jmol/viewer/AminoPolymer.java
> commit -m "10.9.50    11.0 beta  hydrogen bonding update
>
> modifying hydrogen bond routine to more appropriately represent hydrogen
> bonds.
>
> " C:/jmol-dev/workspace/Jmol-v10_9/src/org/jmol/viewer/AminoPolymer.java
>     Sending        src/org/jmol/viewer/AminoPolymer.java
>     Merge conflict during commit
> svn: Commit failed (details follow):
> svn: Your file or directory 'AminoPolymer.java' is probably out-of-date
> svn: The version resource does not correspond to the resource within the
> transaction.  Either the requested version resource is out of date
> (needs to be updated), or the requested version resource is newer than
> the transaction root (restart the commit).
>
> Basically, I was trying to synchronize when Nico's merge of 5446 came
> in. That really broke my system, so I undid it on my local machine. But
> I'm still having problems committing AminoPolymer.java. I don't know how
> to make my file not "probably out-of-date".

Try this: make a backup, locally (not svn!) delete the dir in which the file 
is located, and svn update that dir again.

Egon

-- 
SourceForge developer
blog: http://chem-bla-ics.blogspot.com/

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