Nicolas Vervelle wrote: >Bob Hanson wrote: > > >>Bob Hanson wrote: >> >> >> >> >>>I think this in the category of file that Egon thinks is old enough to >>>just ignore. >>>Nicolas Vervelle wrote: >>> >>> >>> >>> >>> >>> >>>>The last two problems with Jmol-datafiles: >>>> >>>>Error: ..\Jmol-datafiles\cml\nsc244a.cml - >>>>Error: ERROR IN XmlReader.parseReaderXML - org.xml.sax.SAXParseException >>>>- The element type "molecule" must be terminated by the matching end-tag >>>>"</molecule>". >>>> >>>> >>>> >>>> >>>> >>>> >>>> >>>> >>>I'm not getting that error, but I do get: >>> >>>SmarterJmolAdapter:XmlReader thinks:unidentified xml >>> >>> >>> >>> >>> >>> >>Leave the file -- I changed the reader to default to CML. >> >> >> > >In fact, the file is broken: the bondarray tag is closed twice: ><bondarray ... /></bondarray> >I just fixed it. > > > >> >> >> >>>>Error: ..\Jmol-datafiles\gamess\substrate.log - >>>>Error: java.lang.ArrayIndexOutOfBoundsException - 6 >>>> >>>> >>>> >>>> >>>> >>>> >>I read that file just fine. I'll presume that it was a problem with the >>reader that I fixed already. Please clean build and try that again. The >>file has 300 molecular orbitals! >> >> >> >The problem is still here. I just changed the JUnit test to get more >details. Here's the call stack >(if you want to run the test yourself, select TestSmaterJmolAdapter and >Run As -> JUnit test) > >Error: [..\Jmol-datafiles\gamess\substrate.log] >java.lang.ArrayIndexOutOfBoundsException - 6 >org.jmol.adapter.smarter.GamessReader - 234 - readMolecularOrbitals >org.jmol.adapter.smarter.GamessReader - 69 - readAtomSetCollection >org.jmol.adapter.smarter.Resolver - 64 - resolve >org.jmol.adapter.smarter.Resolver - 37 - resolve >org.jmol.adapter.smarter.SmarterJmolAdapter - 80 - openBufferedReader >org.jmol.adapter.smarter.TestSmarterJmolAdapter - 300 - checkOpenFile >org.jmol.adapter.smarter.TestSmarterJmolAdapter - 236 - checkDirectory >org.jmol.adapter.smarter.TestSmarterJmolAdapter - 93 - testGamess > > >Nico > > >------------------------------------------------------------------------- >Using Tomcat but need to do more? Need to support web services, security? >Get stuff done quickly with pre-integrated technology to make your job easier >Download IBM WebSphere Application Server v.1.0.1 based on Apache Geronimo >http://sel.as-us.falkag.net/sel?cmd=lnk&kid=120709&bid=263057&dat=121642 >_______________________________________________ >Jmol-developers mailing list >[email protected] >https://lists.sourceforge.net/lists/listinfo/jmol-developers > > why would it read ok on my system but not yours?
------------------------------------------------------------------------- Using Tomcat but need to do more? Need to support web services, security? Get stuff done quickly with pre-integrated technology to make your job easier Download IBM WebSphere Application Server v.1.0.1 based on Apache Geronimo http://sel.as-us.falkag.net/sel?cmd=lnk&kid=120709&bid=263057&dat=121642 _______________________________________________ Jmol-developers mailing list [email protected] https://lists.sourceforge.net/lists/listinfo/jmol-developers
