On Friday 06 October 2006 23:56, JR Schmidt wrote:
> 1)  Programmatically add atoms and bonds

This is done by implementing the org.jmol.api.JmolAdapter interface for your 
wrapper. See examples/basic in SVN in trunk/, and maybe in the download too, 
or otherwise browse trunk/bc_jmol in the Bioclipse SVN.

> 2)  Programmatically add isosurfaces, including the possibility of
> mapping properties onto the isosurface

Do not know how to do that. In principle this should be done via the above 
adapter too, but not sure if something like a IsoSurfaceIterator is 
implemented. Bob?

Egon

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Cologne University Bioinformatics Center (CUBIC)
Blog: http://chem-bla-ics.blogspot.com/
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