On Tuesday 24 October 2006 23:07, Egon Willighagen wrote:
> when updating Jmol in Bioclipse, I found that current SVN gave a
> NullPointerException on line 572 of org.jmol.viewer.Frame.
>
> Not sure what is causing this; I'm using the CDK IO here, but the Adapter
> interface does not seem to have a method for modelSetAuxiliaryInfo...
>
> Did I overlook something?
>
> Anyway, I applied this patch, and then it worked:
>
> --- src/org/jmol/viewer/Frame.java (revision 6012)
> +++ src/org/jmol/viewer/Frame.java (working copy)
> @@ -569,6 +569,8 @@
> if (group3Lists == null)
> return;
> Hashtable info = getModelSetAuxiliaryInfo();
> + if (info == null)
> + return;
> info.put("group3Lists", group3Lists);
> info.put("group3Counts", group3Counts);
> }
Related to this seems to be another NPE at line 673:
int pt = group3Lists[modelIndex].indexOf(g3code);
where
group3Lists[modelIndex]
is null...
Weird enough the field is indeed not initialized, because (line 283)
isPDBModel == false... which seems to be caused by 'info' (first problem) ==
null...
Bob, I'm sure I'm doing something wrong, but not sure what... ideas?
Adding this patch solved the second problem:
@@ -669,6 +671,7 @@
}
void countGroup(int modelIndex, String code, String group3) {
+ if (!isPDB) return;
String g3code = (group3 + " ").substring(0, 3);
int pt = group3Lists[modelIndex].indexOf(g3code);
if (pt < 0) {
Egon
--
CUBIC
blog: http://chem-bla-ics.blogspot.com/
-------------------------------------------------------------------------
Using Tomcat but need to do more? Need to support web services, security?
Get stuff done quickly with pre-integrated technology to make your job easier
Download IBM WebSphere Application Server v.1.0.1 based on Apache Geronimo
http://sel.as-us.falkag.net/sel?cmd=lnk&kid=120709&bid=263057&dat=121642
_______________________________________________
Jmol-developers mailing list
[email protected]
https://lists.sourceforge.net/lists/listinfo/jmol-developers
