Rolf Huehne wrote: > Bob Hanson wrote: > > I wanted to wait until 10.9.99 is available before I send my comments on > the serialization, to see wether there are differences between 10.9.98 > and 19.9.99 (besides those mentioned). But since the Jmol pages at > St.Olaf are not available now since two days and 10.9.99 is not > officially released yet I will rather do it now. > Bob is doing some bug fixing and asked me not to release 10.9.99. With the amount of modifications has made since his mail about 10.9.99, I think we will directly release 10.9.100 on sourceforge.
> So far I could not detect any differences with our Jmol interface after > executing the state in a different interface (applet with the same size > or much larger). It really worked great!!! And also quite fast! > > However, if I tried very large PDB files, e.g. 1ZYY (~275000 Atoms, 20 > models) or 1HTQ (~980000 Atoms, 10 models) I got several times these > error messages in the java console and the state stopped after (or in > the middle) of the user-defined sets (SuSE 9.3 with Firefox 1.5.0.7 and > Java 1.4.2_11, example URL > "http://www.fli-leibniz.de/cgi-bin/3d_mapping.pl?CODE=1zyy&JMOLVERSION=10.9.98";, > will most probably need more RAM for the JavaVM than default; usually I > use 256MB, for 1HTQ I even needed more than 512MB): > > > javax.swing.text.StateInvariantError: infinite loop in formatting > Not good, and I doubt it will be easy to find where the problem comes from. Bob, maybe something related : - http://forum.java.sun.com/thread.jspa?threadID=643699&messageID=3793070 - http://bugs.sun.com/bugdatabase/view_bug.do?bug_id=4180751 Nico ------------------------------------------------------------------------- Take Surveys. Earn Cash. Influence the Future of IT Join SourceForge.net's Techsay panel and you'll get the chance to share your opinions on IT & business topics through brief surveys - and earn cash http://www.techsay.com/default.php?page=join.php&p=sourceforge&CID=DEVDEV _______________________________________________ Jmol-developers mailing list [email protected] https://lists.sourceforge.net/lists/listinfo/jmol-developers
