so it must be that we are missing what is a necessary condition for the
required loading of a JAR file.
What could it be? Let's check Smiles:
Let's see, how about this:
org.jmol.util.PatternMatcher has
import org.jmol.smiles.InvalidSmilesException;
import org.jmol.smiles.SmilesAtom;
import org.jmol.smiles.SmilesBond;
import org.jmol.smiles.SmilesMolecule;
import org.jmol.smiles.SmilesParser;
OK, so then that's why smiles is being loaded. What do I need to do to
isolate that? This?
1) Move patternMatcher to
org.jmol.smiles
or to its own package.
2) in Eval:
PatternMatcher matcher = new PatternMatcher(viewer);
try {
bs = matcher.getSubstructureSet(smiles);
} catch (Exception e) {
evalError(e.getMessage());
}
needs to be isolated. Can I just use Class.forName() here?
Bob
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