It was a bug in isosurface. I guess I never tested that in a multi-file context. More to do....
Timothy Driscoll wrote: >load files "1S1T.pdb" "1S1U.pdb" "1S1V.pdb" > >I want a surface associated with a region of each model. so this is >what I'm trying: > >model 1.1 >define ligand1 (hetero and not (solvent,[CA])) and model=1.1 >define bsregion1 model=1.1 and (protein and within(12.0,ligand1)) >isosurface surfapbs1 select(bsregion1) model 1.1 solvent 0.8 > > >the above works fine. surfapbs1 takes a few seconds to calculate, >but it appears. > >but then if I run this subsequently: > >model 2.1 >define ligand2 (hetero and not (solvent,[CA])) and model=2.1 >define bsregion2 model=2.1 and (protein and within(12.0,ligand2)) >isosurface surfapbs2 select(bsregion2) model 2.1 solvent 0.8 > > >surfapbs2 appears instantaneously...but surfapbs1 disappears. > >and oddly, if I do the same for the third model: > >model 3.1 >define ligand3 (hetero and not (solvent,[CA])) and model=3.1 >define bsregion3 model=3.1 and (protein and within(12.0,ligand3)) >isosurface surfapbs3 select(bsregion3) model 3.1 solvent 0.8 > > >Jmol says surfapbs3 was created, but it never appears. in the end, >the only visible surface is associated with model 2.1. stepping >through the frames confirms this. however, if I send this: > >isosurface surfapbs3 >isosurface delete > >then the surface disappears. it seems like Jmol is copying each new >isosurface over top of the previous. > > >I thought I had this working earlier in the week, but perhaps not. >can anyone see what I've messed up? I've been banging against this >for most of the day/night, and I'm a bit frustrated. > > >many, many thanks for any help. my head hurts. > >tim > > ------------------------------------------------------------------------- This SF.net email is sponsored by DB2 Express Download DB2 Express C - the FREE version of DB2 express and take control of your XML. No limits. Just data. Click to get it now. http://sourceforge.net/powerbar/db2/ _______________________________________________ Jmol-developers mailing list [email protected] https://lists.sourceforge.net/lists/listinfo/jmol-developers
