Bugs item #1775577, was opened at 2007-08-16 11:13
Message generated for change (Comment added) made by hansonr
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Category: Application
Group: None
>Status: Closed
>Resolution: Fixed
Priority: 5
Private: No
Submitted By: Nobody/Anonymous (nobody)
>Assigned to: Bob Hanson (hansonr)
Summary: ArrayIndexOutOfBoundsException
Initial Comment:
am running Jmol 11.2.8 stand alone application. Open a PDB file (for example,
1ABT.pdb), and open the Jmol Script Console window, type spin on, and clicked
the Undo button. The viewer was hanged and I could see this exception:
Exception in thread "Thread-96" java.lang.ArrayIndexOutOfBoundsException: 73
at
org.jmol.modelsetbio.BioPolymer.getProteinStructure(BioPolymer.java:526)
at
org.jmol.modelsetbio.AlphaMonomer.setProteinStructureType(AlphaMonomer.java:112)
at org.jmol.modelset.Atom.setProteinStructureType(Atom.java:1008)
at org.jmol.modelset.ModelSet.setProteinType(ModelSet.java:814)
at
org.jmol.modelset.ModelManager.setProteinType(ModelManager.java:1499)
at org.jmol.viewer.Viewer.setProteinType(Viewer.java:5699)
at org.jmol.viewer.Eval.structure(Eval.java:4857)
at org.jmol.viewer.Eval.instructionDispatchLoop(Eval.java:913)
at org.jmol.viewer.Eval.runEval(Eval.java:204)
at org.jmol.viewer.Viewer.evalStringWaitStatus(Viewer.java:3099)
at org.jmol.viewer.ScriptManager.runScript(ScriptManager.java:124)
at
org.jmol.viewer.ScriptManager.runNextScript(ScriptManager.java:113)
at
org.jmol.viewer.ScriptManager$ScriptQueueRunnable.run(ScriptManager.java:141)
at java.lang.Thread.run(Unknown Source)
I have to close the viewer and restart.
----------------------------------------------------------------------
>Comment By: Bob Hanson (hansonr)
Date: 2007-08-16 13:30
Message:
Logged In: YES
user_id=1082841
Originator: NO
bug is that state scripts involving proteins with multiple polymers cannot
be restored.
This is fixed for 11.2.9 and 11.3.10
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