Emily, On Jan 15, 2008 6:20 PM, Emily Heureux <[EMAIL PROTECTED]> wrote: > Hi. The scientists and bioinformaticians on my project would like to know > if there is a way to view and interact with the protein sequence and 3D > structure in jmol, similar to how pymol works, where you can make a > selection on the sequence and it shows up on the structure, and vice versa. > I have looked online, but I haven't found that or something like it yet, if > it exists.
Bioclipse (http://www.bioclipse.net) might what you are looking for. A screenshot for the plugin includes: http://wiki.bioclipse.net/index.php?title=Net.bioclipse.jmol Bioclipse allows: * selecting residues from a BioJava sequence viewer * selecting strands/residues from an outline view * full Jmol scripting support * a Jmol script editor I also hacked up is a few basic Jmol script tutorials, which can be used inline, and allow running the example code with a click on the button. There is an active community of Bioclipse developer, and I am sure they are interested in your specific needs. The Bioclipse paper was published last year in BMC Bioinformatics (http://www.biomedcentral.com/1471-2105/8/59/abstract). Egon -- ---- http://chem-bla-ics.blogspot.com/ ------------------------------------------------------------------------- This SF.net email is sponsored by: Microsoft Defy all challenges. Microsoft(R) Visual Studio 2008. http://clk.atdmt.com/MRT/go/vse0120000070mrt/direct/01/ _______________________________________________ Jmol-developers mailing list [email protected] https://lists.sourceforge.net/lists/listinfo/jmol-developers
