Dear Angel Herraez
Thanks for your valuable suggestion.. It is working fine
On 21/01/2008, [EMAIL PROTECTED] <
[EMAIL PROTECTED]> wrote:
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> Today's Topics:
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> 1. Re: (Fwd) Re: Jmol Handbook (Egon Willighagen)
> 2. [ jmol-Bugs-1874607 ] mo TITLEFORMAT default broken
> (SourceForge.net)
> 3. [ jmol-Bugs-1874821 ] color hBonds translucent (SourceForge.net)
> 4. Re: (Fwd) Re: Jmol Handbook (Angel Herraez)
> 5. [ jmol-Bugs-1874821 ] color hBonds translucent (SourceForge.net)
> 6. [ jmol-Bugs-1874607 ] mo TITLEFORMAT default broken
> (SourceForge.net)
> 7. [ jmol-Bugs-1865781 ] Graphics state export needs fully
> semicolon-terminated state (SourceForge.net)
> 8. [ jmol-Bugs-1873541 ] "show file" is broken (SourceForge.net)
> 9. [ jmol-Bugs-1874821 ] color hBonds translucent (SourceForge.net)
>
>
> ----------------------------------------------------------------------
>
> Message: 1
> Date: Fri, 18 Jan 2008 10:25:33 +0100
> From: "Egon Willighagen" <[EMAIL PROTECTED]>
> Subject: Re: [Jmol-developers] (Fwd) Re: Jmol Handbook
> To: [email protected]
> Message-ID:
> <[EMAIL PROTECTED]>
> Content-Type: text/plain; charset=ISO-8859-1
>
> > Seems a good idea to me, I have no problem with it.
>
> Yeah, I was thinking about it earlier... these things tend to be a bit
> tricky... because one could wonder where this will end... Moreover, SF
> does not allow advertisements on SF hosted websites (without their
> approval at least...)
>
> However, the book is not really commercial, though not open source, or...
> ? And you contributed a lot to the project in the past...
>
> I guess I would be fine with it to mention it on the website for a couple
> of weeks...
>
> Egon
>
> --
> ----
> http://chem-bla-ics.blogspot.com/
>
>
>
> ------------------------------
>
> Message: 2
> Date: Fri, 18 Jan 2008 04:51:29 -0800
> From: "SourceForge.net" <[EMAIL PROTECTED]>
> Subject: [Jmol-developers] [ jmol-Bugs-1874607 ] mo TITLEFORMAT
> default broken
> To: [EMAIL PROTECTED]
> Message-ID: <[EMAIL PROTECTED]>
> Content-Type: text/plain; charset="UTF-8"
>
> Bugs item #1874607, was opened at 2008-01-18 12:51
> Message generated for change (Tracker Item Submitted) made by Item
> Submitter
> You can respond by visiting:
>
> https://sourceforge.net/tracker/?func=detail&atid=379133&aid=1874607&group_id=23629
>
> Please note that this message will contain a full copy of the comment
> thread,
> including the initial issue submission, for this request,
> not just the latest update.
> Category: None
> Group: None
> Status: Open
> Resolution: None
> Priority: 5
> Private: No
> Submitted By: Nick Greeves (ngreeves84)
> Assigned to: Nobody/Anonymous (nobody)
> Summary: mo TITLEFORMAT default broken
>
> Initial Comment:
> When I set up a page for some molecular orbitals recently the energy and
> other default info appeared in the top left corner - I liked this.
>
> Then I switched to 11.4.RC1 and I notice that there is no info in the top
> corner. And using mo TITLEFORMAT I can get nothing to appear.
>
> The Script Documentation suggests the default should be
> The default title is "%F | Model %M MO %I/%N | Energy = %E %U | ?Symmetry
> = %S | ?Occupancy = %O" but I'm getting nothing.
> This page uses 11.3.67 (today) and fails.
> http://chemapps.stolaf.edu/jmol/docs/examples-11/mo.htm
>
> This can also be observed here
> http://osxs.ch.liv.ac.uk/~ng/external/orbitalsformaldehyde.htm
>
>
> ----------------------------------------------------------------------
>
> You can respond by visiting:
>
> https://sourceforge.net/tracker/?func=detail&atid=379133&aid=1874607&group_id=23629
>
>
>
> ------------------------------
>
> Message: 3
> Date: Fri, 18 Jan 2008 07:36:06 -0800
> From: "SourceForge.net" <[EMAIL PROTECTED]>
> Subject: [Jmol-developers] [ jmol-Bugs-1874821 ] color hBonds
> translucent
> To: [EMAIL PROTECTED]
> Message-ID: <[EMAIL PROTECTED]>
> Content-Type: text/plain; charset="UTF-8"
>
> Bugs item #1874821, was opened at 2008-01-18 16:36
> Message generated for change (Tracker Item Submitted) made by Item
> Submitter
> You can respond by visiting:
>
> https://sourceforge.net/tracker/?func=detail&atid=379133&aid=1874821&group_id=23629
>
> Please note that this message will contain a full copy of the comment
> thread,
> including the initial issue submission, for this request,
> not just the latest update.
> Category: Scripting
> Group: v11
> Status: Open
> Resolution: None
> Priority: 5
> Private: No
> Submitted By: Angel Herraez (aherraez)
> Assigned to: Miguel (migueljmol)
> Summary: color hBonds translucent
>
> Initial Comment:
> It seems (11.4.RC1) that H bonds cannot be made translucent, either using
> color translucent 0.5
> or
> color hbonds translucent 0.5
> (the numeric value used is irrelevant)
>
> Any reason it should not?
> I find that when making translucent the model, the Hbonds stand up as
> bright white lines, which I find undesirable.
>
> The documentation does not mention any such limitation.
>
>
> ----------------------------------------------------------------------
>
> You can respond by visiting:
>
> https://sourceforge.net/tracker/?func=detail&atid=379133&aid=1874821&group_id=23629
>
>
>
> ------------------------------
>
> Message: 4
> Date: Fri, 18 Jan 2008 16:07:07 +0100
> From: Angel Herraez <[EMAIL PROTECTED]>
> Subject: Re: [Jmol-developers] (Fwd) Re: Jmol Handbook
> To: [EMAIL PROTECTED]
> Message-ID: <[EMAIL PROTECTED]>
> Content-Type: text/plain; charset=ISO-8859-1
>
> Egon wrote:
>
> > Yeah, I was thinking about it earlier... these things tend to be a bit
> > tricky... because one could wonder where this will end... Moreover, SF
> > does not allow advertisements on SF hosted websites (without their
> > approval at least...)
>
> That was my feeling. And that SF policy is quite significant.
>
>
> > However, the book is not really commercial, though not open source,
> or...
>
> Well, it is sold and I make a profit from sales. I'd say it is
> commercial.
>
>
> > ? And you contributed a lot to the project in the past...
>
> Others are contributing quite more than me. And I wouldn't say in the
> past :) I'm basically keeping the website, the Wiki and the Spanish
> localization continuously.
> I'm not taking this as an offense, Egon. Just wanted to keep alive
> the exchange and cheer up.
> As I said before, I do not mind not to advertise at jmol.org. Just
> wanted to hear opinions since I received the suggestion. Let's keep
> the comments going.
>
> > I guess I would be fine with it to mention it on the website for a
> couple
> > of weeks...
>
> That's another choice.
>
> I'll wait to collect more impressions.
>
>
>
>
> ------------------------------
>
> Message: 5
> Date: Sat, 19 Jan 2008 00:36:35 -0800
> From: "SourceForge.net" <[EMAIL PROTECTED]>
> Subject: [Jmol-developers] [ jmol-Bugs-1874821 ] color hBonds
> translucent
> To: [EMAIL PROTECTED]
> Message-ID: <[EMAIL PROTECTED]>
> Content-Type: text/plain; charset="UTF-8"
>
> Bugs item #1874821, was opened at 2008-01-18 09:36
> Message generated for change (Comment added) made by hansonr
> You can respond by visiting:
>
> https://sourceforge.net/tracker/?func=detail&atid=379133&aid=1874821&group_id=23629
>
> Please note that this message will contain a full copy of the comment
> thread,
> including the initial issue submission, for this request,
> not just the latest update.
> Category: Scripting
> Group: v11
> Status: Open
> Resolution: None
> Priority: 5
> Private: No
> Submitted By: Angel Herraez (aherraez)
> >Assigned to: Bob Hanson (hansonr)
> Summary: color hBonds translucent
>
> Initial Comment:
> It seems (11.4.RC1) that H bonds cannot be made translucent, either using
> color translucent 0.5
> or
> color hbonds translucent 0.5
> (the numeric value used is irrelevant)
>
> Any reason it should not?
> I find that when making translucent the model, the Hbonds stand up as
> bright white lines, which I find undesirable.
>
> The documentation does not mention any such limitation.
>
>
> ----------------------------------------------------------------------
>
> >Comment By: Bob Hanson (hansonr)
> Date: 2008-01-19 02:36
>
> Message:
> Logged In: YES
> user_id=1082841
> Originator: NO
>
> problem found
>
> ----------------------------------------------------------------------
>
> You can respond by visiting:
>
> https://sourceforge.net/tracker/?func=detail&atid=379133&aid=1874821&group_id=23629
>
>
>
> ------------------------------
>
> Message: 6
> Date: Sat, 19 Jan 2008 00:37:02 -0800
> From: "SourceForge.net" <[EMAIL PROTECTED]>
> Subject: [Jmol-developers] [ jmol-Bugs-1874607 ] mo TITLEFORMAT
> default broken
> To: [EMAIL PROTECTED]
> Message-ID: <[EMAIL PROTECTED]>
> Content-Type: text/plain; charset="UTF-8"
>
> Bugs item #1874607, was opened at 2008-01-18 06:51
> Message generated for change (Comment added) made by hansonr
> You can respond by visiting:
>
> https://sourceforge.net/tracker/?func=detail&atid=379133&aid=1874607&group_id=23629
>
> Please note that this message will contain a full copy of the comment
> thread,
> including the initial issue submission, for this request,
> not just the latest update.
> Category: None
> Group: None
> Status: Open
> Resolution: None
> Priority: 5
> Private: No
> Submitted By: Nick Greeves (ngreeves84)
> >Assigned to: Bob Hanson (hansonr)
> Summary: mo TITLEFORMAT default broken
>
> Initial Comment:
> When I set up a page for some molecular orbitals recently the energy and
> other default info appeared in the top left corner - I liked this.
>
> Then I switched to 11.4.RC1 and I notice that there is no info in the top
> corner. And using mo TITLEFORMAT I can get nothing to appear.
>
> The Script Documentation suggests the default should be
> The default title is "%F | Model %M MO %I/%N | Energy = %E %U | ?Symmetry
> = %S | ?Occupancy = %O" but I'm getting nothing.
> This page uses 11.3.67 (today) and fails.
> http://chemapps.stolaf.edu/jmol/docs/examples-11/mo.htm
>
> This can also be observed here
> http://osxs.ch.liv.ac.uk/~ng/external/orbitalsformaldehyde.htm
>
>
> ----------------------------------------------------------------------
>
> >Comment By: Bob Hanson (hansonr)
> Date: 2008-01-19 02:37
>
> Message:
> Logged In: YES
> user_id=1082841
> Originator: NO
>
> problem found
>
> ----------------------------------------------------------------------
>
> You can respond by visiting:
>
> https://sourceforge.net/tracker/?func=detail&atid=379133&aid=1874607&group_id=23629
>
>
>
> ------------------------------
>
> Message: 7
> Date: Sat, 19 Jan 2008 00:38:58 -0800
> From: "SourceForge.net" <[EMAIL PROTECTED]>
> Subject: [Jmol-developers] [ jmol-Bugs-1865781 ] Graphics state export
> needs fully semicolon-terminated state
> To: [EMAIL PROTECTED]
> Message-ID: <[EMAIL PROTECTED]>
> Content-Type: text/plain; charset="UTF-8"
>
> Bugs item #1865781, was opened at 2008-01-07 04:15
> Message generated for change (Comment added) made by hansonr
> You can respond by visiting:
>
> https://sourceforge.net/tracker/?func=detail&atid=379133&aid=1865781&group_id=23629
>
> Please note that this message will contain a full copy of the comment
> thread,
> including the initial issue submission, for this request,
> not just the latest update.
> Category: None
> Group: None
> Status: Open
> Resolution: None
> Priority: 5
> Private: No
> Submitted By: Nobody/Anonymous (nobody)
> >Assigned to: Bob Hanson (hansonr)
> Summary: Graphics state export needs fully semicolon-terminated state
>
> Initial Comment:
> If one invokes the Jmol console (at least in 11.4RC1) and clicks the
> "State" button, among the contents one finds
>
> function _setSelectionState();
> select ({0:48});
> set hideNotSelected false;
> end function
>
> Note that the final "end function" does not have a closing semicolon. This
> is legitimate; but if one then copies and pastes the graphics state as an
> inline argument to jmolApplet() one must collapse the state description into
> a single line, when the end function is no longer a properly terminated
> statement.
>
> It would be good if this minor flaw were corrected in future releases, and
> each statement were terminated with a semicolon.
>
> Regards
> Brian McMahon (Research and Development Officer,
> International Union of Crystallography): [EMAIL PROTECTED]
>
> ----------------------------------------------------------------------
>
> >Comment By: Bob Hanson (hansonr)
> Date: 2008-01-19 02:38
>
> Message:
> Logged In: YES
> user_id=1082841
> Originator: NO
>
> problem found
>
> ----------------------------------------------------------------------
>
> You can respond by visiting:
>
> https://sourceforge.net/tracker/?func=detail&atid=379133&aid=1865781&group_id=23629
>
>
>
> ------------------------------
>
> Message: 8
> Date: Sat, 19 Jan 2008 01:00:20 -0800
> From: "SourceForge.net" <[EMAIL PROTECTED]>
> Subject: [Jmol-developers] [ jmol-Bugs-1873541 ] "show file" is
> broken
> To: [EMAIL PROTECTED]
> Message-ID: <[EMAIL PROTECTED]>
> Content-Type: text/plain; charset="UTF-8"
>
> Bugs item #1873541, was opened at 2008-01-17 03:34
> Message generated for change (Comment added) made by hansonr
> You can respond by visiting:
>
> https://sourceforge.net/tracker/?func=detail&atid=379133&aid=1873541&group_id=23629
>
> Please note that this message will contain a full copy of the comment
> thread,
> including the initial issue submission, for this request,
> not just the latest update.
> Category: Scripting
> Group: v11
> Status: Open
> Resolution: None
> Priority: 5
> Private: No
> Submitted By: Angel Herraez (aherraez)
> >Assigned to: Bob Hanson (hansonr)
> Summary: "show file" is broken
>
> Initial Comment:
> "show file" (as in show file myscript.spt) is not working; throws error
> in console:
> script ERROR: bad argument count
>
> Seems to have broken somewhere between 11.1.7 and 11.1.22
>
>
>
> ----------------------------------------------------------------------
>
> >Comment By: Bob Hanson (hansonr)
> Date: 2008-01-19 03:00
>
> Message:
> Logged In: YES
> user_id=1082841
> Originator: NO
>
> problem found
>
> ----------------------------------------------------------------------
>
> You can respond by visiting:
>
> https://sourceforge.net/tracker/?func=detail&atid=379133&aid=1873541&group_id=23629
>
>
>
> ------------------------------
>
> Message: 9
> Date: Sun, 20 Jan 2008 17:58:15 -0800
> From: "SourceForge.net" <[EMAIL PROTECTED]>
> Subject: [Jmol-developers] [ jmol-Bugs-1874821 ] color hBonds
> translucent
> To: [EMAIL PROTECTED]
> Message-ID: <[EMAIL PROTECTED]>
> Content-Type: text/plain; charset="UTF-8"
>
> Bugs item #1874821, was opened at 2008-01-18 09:36
> Message generated for change (Comment added) made by hansonr
> You can respond by visiting:
>
> https://sourceforge.net/tracker/?func=detail&atid=379133&aid=1874821&group_id=23629
>
> Please note that this message will contain a full copy of the comment
> thread,
> including the initial issue submission, for this request,
> not just the latest update.
> Category: Scripting
> Group: v11
> Status: Open
> >Resolution: Fixed
> Priority: 5
> Private: No
> Submitted By: Angel Herraez (aherraez)
> Assigned to: Bob Hanson (hansonr)
> Summary: color hBonds translucent
>
> Initial Comment:
> It seems (11.4.RC1) that H bonds cannot be made translucent, either using
> color translucent 0.5
> or
> color hbonds translucent 0.5
> (the numeric value used is irrelevant)
>
> Any reason it should not?
> I find that when making translucent the model, the Hbonds stand up as
> bright white lines, which I find undesirable.
>
> The documentation does not mention any such limitation.
>
>
> ----------------------------------------------------------------------
>
> >Comment By: Bob Hanson (hansonr)
> Date: 2008-01-20 19:58
>
> Message:
> Logged In: YES
> user_id=1082841
> Originator: NO
>
> fixed for 11.5.3 / 11.4.RC2
>
> ----------------------------------------------------------------------
>
> Comment By: Bob Hanson (hansonr)
> Date: 2008-01-19 02:36
>
> Message:
> Logged In: YES
> user_id=1082841
> Originator: NO
>
> problem found
>
> ----------------------------------------------------------------------
>
> You can respond by visiting:
>
> https://sourceforge.net/tracker/?func=detail&atid=379133&aid=1874821&group_id=23629
>
>
>
> ------------------------------
>
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