Bob,
Just another thank you for your great response and work keeping Jmol
running and debugged. I hope I can start contributing a little more
again soon.
Jonathan
On Mar 14, 2008, at 5:03 PM, SourceForge.net wrote:
> Bugs item #1914444, was opened at 2008-03-14 12:21
> Message generated for change (Comment added) made by hansonr
> You can respond by visiting:
> https://sourceforge.net/tracker/?
> func=detail&atid=379133&aid=1914444&group_id=23629
>
> Please note that this message will contain a full copy of the
> comment thread,
> including the initial issue submission, for this request,
> not just the latest update.
> Category: File Input/Output
> Group: None
>> Status: Closed
>> Resolution: Fixed
> Priority: 5
> Private: No
> Submitted By: Jonathan Gutow (gutow)
> Assigned to: Miguel (migueljmol)
> Summary: problems with lcaocartoons in scripts...
>
> Initial Comment:
> Application version 11.4RC11
> Two related issues:
> 1)In the following simple script (applied after loading the
> attached file, ethylene.log) some of the lcao sp2 cartoons do not
> always show up colored blue and translucent. The commands always
> work when entered by hand into the script console. Is there a load
> timing issue?
> ----script---
> #display sigma lcao framework in ethylene.log
> frame last;
> select (carbon and 1.10);
> lcaoCartoon "sp2a" color blue translucent;
> lcaoCartoon "sp2b" color blue translucent;
> lcaoCartoon "sp2c" color blue translucent;
> select none;
> select (hydrogen and 1.10);
> lcaoCartoon "s" color blue translucent;
> ---end script---
> 2) I believe this is related. If the results of this script are
> exported as a script the generated script does not contain any
> information on the "s" lcao cartoons. They definitely are there
> because they are shown by a "lcaoCartoon list" command in the
> script window.
>
> ----------------------------------------------------------------------
>
>> Comment By: Bob Hanson (hansonr)
> Date: 2008-03-14 17:03
>
> Message:
> Logged In: YES
> user_id=1082841
> Originator: NO
>
> yes, these are related. This is fixed for 11.5.16 and 11.4.RC12
>
> BUT there is also a problem with those commands. LCAOCARTOON works a
> little differently from the other commands. You need to specify the
> color
> up front. This is because with lcaoCartoon you first set the
> default values
> of parameters, then create the cartoons. I realize that's not very
> clear in
> the documentation....
>
> lcaoCartoon color blue translucent
> lcaoCartoon "sp2a"
> lcaoCartoon "sp2b"
>
> etc.
>
> But beyond that there was a bug in the state business for
> lcaoCartoon, so
> that was definitely part of your problem.
>
> Bob
>
>
>
>
> ----------------------------------------------------------------------
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> func=detail&atid=379133&aid=1914444&group_id=23629
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Dr. Jonathan H. Gutow
Chemistry Department [EMAIL PROTECTED]
UW-Oshkosh Office:920-424-1326
800 Algoma Boulevard FAX:920-424-2042
Oshkosh, WI 54901
http://www.uwosh.edu/faculty_staff/gutow/
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