I fixed the "problem", now I have another problem. Go to the page:
http://rdrs.uaic.ro/minerals/calcite.html, in the same section (scroll down to
the Raman spectrum and vibrations) I have this code:
<form action="" name="vibrations">
<strong>Vibrations:</strong><br>
<select>
<option value="select">Select vibration by clicking here</option>
<option class="green" value="T(Ca, CO3)"
onClick="document.jmol.script('frame 4')">T(Ca, CO3)</option>
<option value="T(Ca, CO3)" onClick="document.jmol.script('frame 5')">T(Ca,
CO3)</option>
<option class="green" value="ν4b (E')" onClick="document.jmol.script('frame
6')">ν4b (E')</option>
<option value="ν4a (E')" onClick="document.jmol.script('frame 7')">ν4a
(E')</option>
<option value="ν2 (A''2)" onClick="document.jmol.script('frame 8')">ν2
(A''2)</option>
<option class="green" value="ν1 (A'1)" onClick="document.jmol.script('frame
9')">ν1 (A'1)</option>
<option class="green" value="ν3a (E')" onClick="document.jmol.script('frame
10')">ν3a (E')</option>
<option value="ν3b (E')" onClick="document.jmol.script('frame 11')">ν3b
(E')</option>
<option value="all vibration" onClick="document.jmol.script('frame
all')">All vibration</option>
</select>
</form>
This form (onClick event) works fine just in Firefox, in Internet Explorer
don't work. I used google search and some people says: IE don't support onClick
event attribute. Someone can help me to fix onClick event for IE?
P.S. "unrealistically large!" - I don't understand.
stud. Andrei Ionut Apopei
________________________________
Possibly. But first you will have to promise me you won't make the atom
vibrations be so totally unrealistically large! ;)
So you are using animated gifs there that you produce with something. You will
need to:
1) create a JavaScript function on that page that will be called by the image
map.
2) have access to the G03 log file.
3) decide what you want to have happen in the Jmol window -- will it be the
atoms of the crystal themselves vibrating? Will it be another structure,
simpler and more like the one in the GIF?
4) assign vibration vectors to the atoms in the Jmol crystal and get them
vibrating.
(4) is the tricky part. If you want the crystal atoms to vibrate, I suggest
loading the G03 log file into a second Jmol frame using "load append", then
copy the vibration vectors when needed to the atoms in the first model -- the
crystal using something like:
load append "myfile.g03"
display 1.1
{1.1}.vxyz = {2.2}.vxyz.all
vibration on
But you may have to map the atoms differently -- the above assumes the first
atom of the g03 file is the same as the first atom in the CIF file, etc. So you
might need something like:
{atomIndex=0}.vxyz = {atomnoIndex=33}.vxyz
{atomIndex=1}.vxyz = {atomnoIndex=34}.vxyz
etc.
Bob Hanson
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