Bob,
I looked at the xyz reader code and do not think I can accomplish what I had
in mind.
My goal was to include the color and radius values in the atom definition
line so they got set during model reading. In this use case the number of
atoms is not that large so I will just set the color and size after all the
atoms have been loaded and I know their indice.
Thanks,
Joe
_____
From: Robert Hanson [mailto:[email protected]]
Sent: Friday, November 13, 2009 8:44 PM
To: [email protected]
Subject: Re: [Jmol-developers] set atom color/radius on load
Not sure what "during load" refers to, but
label %4.0[color] %3.2[vdw]
gets you rgb colors and van der Waals radii.
label %4.0[color] %3.2[radius]
gets you the same with instead the current spacefill radius
you can set the atom color using a script:
{atomindex=1}.color = "[xFF00FF]"
{atomindex=2}.color = "red"
{atomindex=1}.color = "[128 0 128]"
that sort of thing. Similarly, you can set radii using, for example,
{atomindex=33}.radius = 2.0
Bob
On Thu, Nov 12, 2009 at 2:19 PM, Joe Gatewood <[email protected]> wrote:
I have spent some time looking for the syntax to use to set the color and
radius of an individual atom at load time.
For example in one of my use cases I am building up the model one atom at a
time and loading using evalScript("|K 10 3 20|...")
Can I set the color and radius of each atom as part of the atom descriptor?
I enjoyed the web content (discussion) on Jmol colors. I can set the color
with select fine but did not find documentation on setting single atom color
during load.
Thanks,
Joe
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-- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
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