select ::10
isn't a recognized selection. Tenth model in the first file is
select 1.10
You can also use
select model=10
if you want to use the MODEL reference number in the PDB file.
restrict
is pretty much deprecated. I would recommend using
display
because it is reversible and just basically makes a whole lot more sense.
Bob
On Wed, Oct 6, 2010 at 2:00 AM, Eduardo Harguindey Lopez <
harguindey_lopez_edua...@lilly.com> wrote:
>
> Hello Everyone.
>
> I'm newbie in Jmol, and I'm having some dificulties translating some
> Chime/Rasmol scripts to run with Jmol.
>
> The problem I'm facing is when selecting models, as in the input .pdb
> several models are present.
>
> This is the Chime script to convert:
>
> script="select all; wireframe off;
> select ::10; cartoon 30; color greenblue;
> select ::10 and within(12.0, ::11); wireframe 10;
> color cpk; restrict not hydrogen;
> select ::10 and within(12.0, ::11) and carbon;
> color greenblue; restrict not hydrogen;"
>
> What seems to break the script in Jmol is having a model in "within".
>
> I've seen in the email archive a post from 2005 stating that "Models are
> completely independent. We do not bond across models and the within operator
> does not span models".
>
> Has this been addressed since then?
>
> I'm using jmol-12.0.15 in my tests.
>
> Many thanks.
> Regards,
> Edu.
>
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--
Robert M. Hanson
Professor of Chemistry
St. Olaf College
1520 St. Olaf Ave.
Northfield, MN 55057
http://www.stolaf.edu/people/hansonr
phone: 507-786-3107
If nature does not answer first what we want,
it is better to take what answer we get.
-- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
------------------------------------------------------------------------------
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standards for HTML5, CSS3, SVG 1.1, ECMAScript5, and DOM L2 & L3.
Spend less time writing and rewriting code and more time creating great
experiences on the web. Be a part of the beta today.
http://p.sf.net/sfu/beautyoftheweb
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