No real solution for my question yet - so I try to explain the problem again in other words: Two or more pdb files are loaded with "load append"
I want to rotate/translate one protein using a 3x3 matrix and translation-Vector. I am looking for the appropriate way to do this. I do not completely understand yet, how the proteins and their Atoms are organized in Jmol. Somehow there are models, each having a number. I do not understand, how these models are accessed using the API. I found a class org.pdbj.viewer.molecules.Atom which has getters and setters for the 3D-coordinates. That could be sufficient if I knew, how to get the Atom objects for the protein under consideration. I could then transform each of the atoms using these setX, setY and setZ -methods. Or perhaps there is already an utility method in Jmol, to perform affine transformations for entire molecules? Cheers Christoph ------------------------------------------------------------------------------ Nokia and AT&T present the 2010 Calling All Innovators-North America contest Create new apps & games for the Nokia N8 for consumers in U.S. and Canada $10 million total in prizes - $4M cash, 500 devices, nearly $6M in marketing Develop with Nokia Qt SDK, Web Runtime, or Java and Publish to Ovi Store http://p.sf.net/sfu/nokia-dev2dev _______________________________________________ Jmol-developers mailing list Jmol-developers@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/jmol-developers
