Fixed for Jmol 12.1.22 and 12.0.22.
On Fri, Nov 12, 2010 at 10:54 AM, Dr. Christoph Gille <
christoph.gi...@charite.de> wrote:
> Here is a reproducable bug:
>
> I noticed it in STRAP but it can be reproduced with the stand alone Jmol
>
> It can be reproduced on Linux with the following steps:
>
> Download Jmol and start the script ./jmol
>
> Open Jmol console
>
>
>
> $ load /home/n/m1/pdb1sbt.ent
> $ cartoon on
>
> $ load append /home/n/m1/pdb1sbc.ent
> 2 models
> $ cartoon on
>
>
> Open ContextMenu select models [all]
> Now both are shown
>
> $ zoom
> $ select all
> 3,876 atoms selected
>
>
> $ zoom
> $ select 1.1
> 1,955 atoms selected
> $ cartoon off
> $ zap 1.1
> 1,955 atoms deleted
> 1,921 atoms selected
> $
>
>
> The view is frozen. Not rotating. No menu items.
> This is due to Exception:
>
>
> Exception in thread "AWT-EventQueue-0"
> java.lang.ArrayIndexOutOfBoundsException: 3850
> at org.jmol.shapebio.BioShape.setModelClickability(Unknown Source)
> at org.jmol.shapebio.BioShapeCollection.setModelClickability(Unknown
> Source)
> at org.jmol.viewer.ShapeManager.setModelVisibility(Unknown Source)
> at org.jmol.viewer.Viewer.setModelVisibility(Unknown Source)
> at org.jmol.viewer.Viewer.renderScreenImage(Unknown Source)
> at org.jmol.viewer.Viewer.renderScreenImage(Unknown Source)
>
>
> The Line numbers correspond to the current svn version.
>
> Christoph
>
>
>
>
>
>
> ------------------------------------------------------------------------------
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--
Robert M. Hanson
Professor of Chemistry
St. Olaf College
1520 St. Olaf Ave.
Northfield, MN 55057
http://www.stolaf.edu/people/hansonr
phone: 507-786-3107
If nature does not answer first what we want,
it is better to take what answer we get.
-- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
------------------------------------------------------------------------------
Centralized Desktop Delivery: Dell and VMware Reference Architecture
Simplifying enterprise desktop deployment and management using
Dell EqualLogic storage and VMware View: A highly scalable, end-to-end
client virtualization framework. Read more!
http://p.sf.net/sfu/dell-eql-dev2dev
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