> If a carbon is sp2-hybridized, as indicated here by > the planar geometry, Jmol will correctly not add H atoms to that position.
But it's not sp2. Even if planar (because all atoms have z=0, being a drawn structure), it has only 3 single bonds. To me, that does not mean sp2. I would expect sp2 interpretation when it has 2 single an 1 double bond, for example. > load sample1.mol FILTER "2D" So that's what I have to use everytime, then? How can I do that with jmolLoadInlneScript() ? I am not lading from file, but from a text string. ------------------------------------------------------------------------------ Centralized Desktop Delivery: Dell and VMware Reference Architecture Simplifying enterprise desktop deployment and management using Dell EqualLogic storage and VMware View: A highly scalable, end-to-end client virtualization framework. Read more! http://p.sf.net/sfu/dell-eql-dev2dev _______________________________________________ Jmol-developers mailing list Jmol-developers@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/jmol-developers
