Bugs item #3151350, was opened at 2011-01-04 14:12
Message generated for change (Settings changed) made by adunn8
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Category: Applet
Group: None
Status: Open
Resolution: None
>Priority: 7
Private: No
Submitted By: Andrew Dunn (adunn8)
Assigned to: Bob Hanson (hansonr)
Summary: Applet not loading files after Java 6 update 22

Initial Comment:
We are having a problem with Jmol applet not being able to load new files via 
the javascript interface after the applet is instantiated.  The initial file is 
loads fine, but when we switch to another model (see link), we get a 
java.security.AccessControlException.  I have observed the issue only affects 
clients who are running Java 6 update 22 or higher.  It was working fine 
previous to this update.

Link to Jmol application (Protein Viewer):
http://elsevier-apps.sciverse.com/ProteinViewer/ProteinViewer.html?pii=S0022283610004328#

Steps to recreate (must have java 6 update 22 or higher installed):
1.) Access link above - Protein Viewer application will load the first 
structure in the film strip above (highlighted yellow)
2.) Click on any other structure in the filmstrip above the Jmol applet - The 
Jmol will try to load the structure's file for 10 seconds and then a custom 
error message will be displayed.  The file has failed to load.
3.) Check java console. - You should see a stack trace similar to the one 
attched.
4.) If desired, uninstall java and install an update 21 or earlier to see 
Protein Viewer functioning correctly


I have attached the Java console output.  Notice that the first file 
(2VOA.pdb.gz) loads fine, but the second produces an error.  Both use the same 
URI.

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