Hello, My apologies on the first mail that was sent. I'm a trying to adapt Jmol for usage as a viewer for antigenic cartography data. As of current with a slightly tweaked menu and using xyz input files we are able to show a 3D model of antigen relations with Jmol however, Jmol does not like the atoms in the xyz input file having their antigen names. I have found where the input is parsed ( SmilesParser.java: parseAtom ) but am slight at a loss of how to "bypass" the throwing of an invalid atom symbol and inserting our own data.
Thank you, Lamar Barnett j.lamar.barn...@gmail.com ------------------------------------------------------------------------------ The ultimate all-in-one performance toolkit: Intel(R) Parallel Studio XE: Pinpoint memory and threading errors before they happen. Find and fix more than 250 security defects in the development cycle. Locate bottlenecks in serial and parallel code that limit performance. http://p.sf.net/sfu/intel-dev2devfeb _______________________________________________ Jmol-developers mailing list Jmol-developers@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/jmol-developers
