Bugs item #3501723, was opened at 2012-03-11 04:24 Message generated for change (Comment added) made by aherraez You can respond by visiting: https://sourceforge.net/tracker/?func=detail&atid=379133&aid=3501723&group_id=23629
Please note that this message will contain a full copy of the comment thread, including the initial issue submission, for this request, not just the latest update. Category: Applet Group: None Status: Open Resolution: None Priority: 5 Private: No Submitted By: Robert Davis (elrobo) Assigned to: Bob Hanson (hansonr) Summary: Possible bug with link cards Initial Comment: This pdb file gives an "unrecognized file format" error: http://dev.glycam.org/userdata/tools/mdfiles/ecd0d1df-bdb8-4add-939f-5180b547a705/2.pdb. The error also includes the first three lines of the pdb file (link cards). When I remove the third link card, it works. Here's the file: http://dev.glycam.org/userdata/tools/mdfiles/ecd0d1df-bdb8-4add-939f-5180b547a705/1.pdb. I am invoking jmol like this: jmolApplet([200, 400], "load /userdata/tools/mdfiles/ecd0d1df-bdb8-4add-939f-5180b547a705/2.pdb"); ---------------------------------------------------------------------- Comment By: Angel Herraez (aherraez) Date: 2012-03-11 04:46 Message: Hi Robert. This is not a bug. Your pdb file is nonstandard and hence Jmol needs some hints to know this is a pdb-formatted file. I guess the difference you see between files 1 and 2 is purely random. So try to instruct Jmol to read it as a pdb file: jmolApplet([200, 400], "load pdb::/userdata/tools/mdfiles/ecd0d1df-bdb8-4add-939f-5180b547a705/2.pdb"); See "load" in the scripting documentation for more details ---------------------------------------------------------------------- You can respond by visiting: https://sourceforge.net/tracker/?func=detail&atid=379133&aid=3501723&group_id=23629 ------------------------------------------------------------------------------ Virtualization & Cloud Management Using Capacity Planning Cloud computing makes use of virtualization - but cloud computing also focuses on allowing computing to be delivered as a service. http://www.accelacomm.com/jaw/sfnl/114/51521223/ _______________________________________________ Jmol-developers mailing list Jmol-developers@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/jmol-developers
