superb!
On Wed, Mar 21, 2012 at 11:26 AM, Jonathan Gutow <gu...@uwosh.edu> wrote:
> I was able to successfully embed it in the SAGE web server. Now for lots
> of code cleanup...
>
> Jonathan
>
> On Mar 20, 2012, at 7:43 PM, Robert Hanson wrote:
>
> OK, so I definitely learned something!
>
> On Tue, Mar 20, 2012 at 5:48 PM, Jonathan Gutow <gu...@uwosh.edu> wrote:
>
>> Bob,
>>
>> You did it! My preliminary tests show it works. I have to do some
>> modifications to get it embedded in Sage, but I think it will work fine.
>>
>> Thanks,
>> Jonathan
>>
>> On Mar 19, 2012, at 9:53 PM, Robert Hanson wrote:
>>
>> OK, Jonathan. I think I found the problem. Please try what I just checked
>> in -- do a build, and then use jmolData.jar instead of jmol.jar.
>>
>> Formerly:
>>
>> JmolData.jar -s foo.spt
>>
>> execute the script foo.spt with absolutely no graphics and no
>> rendering, including no image creation
>>
>> now:
>>
>> JmolData.jar -s foo.spt
>>
>> execute the script foo.spt still with rending for image creation, just
>> not for screen display
>>
>> Jmoldata.jar -n -s foo.spt
>>
>> as before, now for performance enhancement, no graphics of any kind.
>>
>> Let's see how that works.
>>
>> Bob
>>
>>
>> On Mon, Mar 19, 2012 at 8:30 PM, Robert Hanson <hans...@stolaf.edu>wrote:
>>
>>> If awt is not there, you are out of luck. But with the -n flag there is
>>> no creation of Display. But there might be a reference to it. Let me see.
>>> Based on this discussion:
>>> http://java.sun.com/developer/technicalArticles/J2SE/Desktop/headless/
>>> we should be able to do it.
>>>
>>> Bob
>>>
>>>
>>> On Mon, Mar 19, 2012 at 6:06 PM, Jonathan Gutow <gu...@uwosh.edu> wrote:
>>>
>>>> Bob,
>>>>
>>>> Thanks for trying...Your changes definitely reduce the error messages,
>>>> but the application is still looking for screen dimensions somewhere in the
>>>> tree after entering JmolPanel. It is making a call to the awt package. I'm
>>>> suspicious this is all associated with the allocation of a Display near
>>>> line 242 in JmolPanel.
>>>>
>>>> I've got a solution for Sage, but we should keep picking at this as
>>>> more people would be able to use Jmol as a server side image generator.
>>>> Some people really don't like running a GUI on their servers.
>>>>
>>>> Jonathan
>>>> On Mar 19, 2012, at 3:51 PM, Robert Hanson wrote:
>>>>
>>>> Could be I'm wrong.Try what I just checked in. Be sure to use the
>>>>
>>>> -ions t.spt
>>>>
>>>> option (silent/no console/no graphics)
>>>>
>>>> You won't get THAT error. but will it create an image? I used this
>>>> script:
>>>>
>>>> load $tylenol
>>>> write image 300 300 t.png
>>>>
>>>>
>>>> Bob
>>>>
>>>>
>>>> On Mon, Mar 19, 2012 at 7:55 AM, Gutow, Jonathan H <gu...@uwosh.edu>wrote:
>>>>
>>>>> I dug a little and agree it would be a significant undertaking to make
>>>>> the image generation work without the GUI. That said, we might want to
>>>>> put
>>>>> that on a long term to-do list.
>>>>>
>>>>
>>>>
>>>> --
>>>> Robert M. Hanson
>>>> Professor of Chemistry
>>>> St. Olaf College
>>>> 1520 St. Olaf Ave.
>>>> Northfield, MN 55057
>>>> http://www.stolaf.edu/people/hansonr
>>>> phone: 507-786-3107
>>>>
>>>>
>>>> If nature does not answer first what we want,
>>>> it is better to take what answer we get.
>>>>
>>>> -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
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>>>>
>>>>
>>>> Dr. Jonathan H. Gutow
>>>> Chemistry Department gu...@uwosh.edu
>>>> UW-Oshkosh Office:
>>>> 920-424-1326
>>>> 800 Algoma Boulevard FAX:920-424-2042
>>>> Oshkosh, WI 54901
>>>> http://www.uwosh.edu/facstaff/gutow
>>>>
>>>>
>>>>
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>>>>
>>>
>>>
>>> --
>>> Robert M. Hanson
>>> Professor of Chemistry
>>> St. Olaf College
>>> 1520 St. Olaf Ave.
>>> Northfield, MN 55057
>>> http://www.stolaf.edu/people/hansonr
>>> phone: 507-786-3107
>>>
>>>
>>> If nature does not answer first what we want,
>>> it is better to take what answer we get.
>>>
>>> -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
>>>
>>
>>
>>
>> --
>> Robert M. Hanson
>> Professor of Chemistry
>> St. Olaf College
>> 1520 St. Olaf Ave.
>> Northfield, MN 55057
>> http://www.stolaf.edu/people/hansonr
>> phone: 507-786-3107
>>
>>
>> If nature does not answer first what we want,
>> it is better to take what answer we get.
>>
>> -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
>>
>> ------------------------------------------------------------------------------
>> This SF email is sponsosred by:
>> Try Windows Azure free for 90 days Click Here
>> http://p.sf.net/sfu/sfd2d-msazure
>> _______________________________________________
>> Jmol-developers mailing list
>> Jmol-developers@lists.sourceforge.net
>> https://lists.sourceforge.net/lists/listinfo/jmol-developers
>>
>>
>> Dr. Jonathan H. Gutow
>> Chemistry Department gu...@uwosh.edu
>> UW-Oshkosh Office: 920-424-1326
>> 800 Algoma Boulevard FAX:920-424-2042
>> Oshkosh, WI 54901
>> http://www.uwosh.edu/facstaff/gutow
>>
>>
>>
>> ------------------------------------------------------------------------------
>> This SF email is sponsosred by:
>> Try Windows Azure free for 90 days Click Here
>> http://p.sf.net/sfu/sfd2d-msazure
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>> Jmol-developers mailing list
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>> https://lists.sourceforge.net/lists/listinfo/jmol-developers
>>
>>
>
>
> --
> Robert M. Hanson
> Professor of Chemistry
> St. Olaf College
> 1520 St. Olaf Ave.
> Northfield, MN 55057
> http://www.stolaf.edu/people/hansonr
> phone: 507-786-3107
>
>
> If nature does not answer first what we want,
> it is better to take what answer we get.
>
> -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
>
> ------------------------------------------------------------------------------
> This SF email is sponsosred by:
> Try Windows Azure free for 90 days Click Here
> http://p.sf.net/sfu/sfd2d-msazure
> _______________________________________________
> Jmol-developers mailing list
> Jmol-developers@lists.sourceforge.net
> https://lists.sourceforge.net/lists/listinfo/jmol-developers
>
>
> Dr. Jonathan H. Gutow
> Chemistry Department gu...@uwosh.edu
> UW-Oshkosh Office: 920-424-1326
> 800 Algoma Boulevard FAX:920-424-2042
> Oshkosh, WI 54901
> http://www.uwosh.edu/facstaff/gutow
>
>
>
> ------------------------------------------------------------------------------
> This SF email is sponsosred by:
> Try Windows Azure free for 90 days Click Here
> http://p.sf.net/sfu/sfd2d-msazure
> _______________________________________________
> Jmol-developers mailing list
> Jmol-developers@lists.sourceforge.net
> https://lists.sourceforge.net/lists/listinfo/jmol-developers
>
>
--
Robert M. Hanson
Professor of Chemistry
St. Olaf College
1520 St. Olaf Ave.
Northfield, MN 55057
http://www.stolaf.edu/people/hansonr
phone: 507-786-3107
If nature does not answer first what we want,
it is better to take what answer we get.
-- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
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