I got the same problem with 13.0.12 and I think it may relate specifically to
loading files that are not .pdb.gz. I got it to work using a PNGJ scene made
with 1lcd.pdb, but not one made with a .pmesh file. I also got some oddities
with a .xyz file, but haven't reproduced that. I may have messed up that file..
I will try it with the development version as well.
Jonathan
On Jan 26, 2013, at 1:40 AM, Robert Hanson wrote:
> or maybe even 13.0.12 --- you are several versions back using 13.0.9 (Nov,
> 2012)
>
>
> On Sat, Jan 26, 2013 at 9:35 AM, Robert Hanson <hans...@stolaf.edu> wrote:
> Can you try that with Jmol 13.1.12 and tell me if that is still a problem?
> I'm not seeing it:
>
> >jmoldata -s plwilliamson.png
>
> JmolData using command options ["-s", "plwilliamson.png"]
> Add -n (NOGRAPHICS) for faster performance if you are not creating images.
> (C) 2012 Jmol Development
> Jmol Version: 13.1.12 2013-01-23 14:58
> java.vendor: Oracle Corporation
> java.version: 1.7.0_10
> os.name: Windows 8
> Access: ALL
> memory: 12.1/95.0
> processors available: 4
> useCommandThread: false
> Executing script from file: plwilliamson.png
> FileManager opening C:\jmol-dev\bobtest\plwilliamson.png
> FileManager opening C:\jmol-dev\bobtest\plwilliamson.png|JmolManifest.txt
> FileManager opening C:\jmol-dev\bobtest\plwilliamson.png
> FileManager opening C:\jmol-dev\bobtest\plwilliamson.png|state.spt
> FileManager opening C:\jmol-dev\bobtest\plwilliamson.png
>
> FileManager.getAtomSetCollectionFromFile(C:/jmol-dev/bobtest/plwilliamson.png|2a
> gv.pdb.gz)
> FileManager opening C:\jmol-dev\bobtest\plwilliamson.png|2agv.pdb.gz
> FileManager opening C:\jmol-dev\bobtest\plwilliamson.png
> The Resolver thinks Pdb
> ....
>
> Bob
>
>
> --
> Robert M. Hanson
> Larson-Anderson Professor of Chemistry
> Chair, Chemistry Department
> St. Olaf College
> Northfield, MN
> http://www.stolaf.edu/people/hansonr
>
>
> If nature does not answer first what we want,
> it is better to take what answer we get.
>
> -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
>
>
>
>
> --
> Robert M. Hanson
> Larson-Anderson Professor of Chemistry
> Chair, Chemistry Department
> St. Olaf College
> Northfield, MN
> http://www.stolaf.edu/people/hansonr
>
>
> If nature does not answer first what we want,
> it is better to take what answer we get.
>
> -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
>
> ------------------------------------------------------------------------------
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http://www.uwosh.edu/facstaff/gutow
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