On 04/17/2015 06:47 PM, Rolf Huehne wrote:
> On 04/17/2015 01:44 PM, Rolf Huehne wrote:
>> Hi all,
>>
>> I have some problems debugging a complex script in Jmol.
>>
>> First of all, the command 'set scriptReportingLevel' doesn't seem to
>> work in Jmol 14.3.13_2015.04.08. It is always setting the value to zero.
>>
>> Q: What do the numbers (e.g.: $[2.295.299]) in the debugging output
>> after the command 'set showScript on' mean?
>>
>> The first number looks like it could be the function call level.
>> The third number could be the line number within the function after
>> removing empty lines.
>>
>> Following the debugging information for a problematic function (~500
>> lines of code, see short extract below) the critical line seems to be a
>> 'for' loop. Depending on the input data the loop sometimes cycles more
>> often (twice instead of once) than indicated by the variable value
>> ('fileCount=1' in any of the described cases) or the function is exited
>> (without any error message or exception) after reaching the line the
>> second time:
>>
> I found another problem inside the function that leads to an
> extraordinary function exit. For this one I could narrow down the problem.
> The following example function demonstrates it: if you try to loop over
> an empty hash the function is exited too early.
>
It looks like this was actually also causing the other exit problem,
although it wasn't occuring near a loop over a hash.
But after I have introduced a size check before every loop over a hash
the function seems to be running now as expected on the tested datasets.
Regards,
Rolf
--
Rolf Huehne
Postdoc
Leibniz Institute for Age Research - Fritz Lipmann Institute (FLI)
Beutenbergstrasse 11
07745 Jena, Germany
Phone: +49 3641 65 6205
Fax: +49 3641 65 6210
E-Mail: rhue...@fli-leibniz.de
Website: http://www.fli-leibniz.de
Scientific Director: Prof. Dr. K. Lenhard Rudolph
Head of Administration: Dr. Daniele Barthel
Chairman of Board of Trustees: Dennys Klein
VAT No: DE 153 925 464
Register of Associations: No. 230296, Amtsgericht Jena
Tax Number: 162/141/08228
------------------------------------------------------------------------------
BPM Camp - Free Virtual Workshop May 6th at 10am PDT/1PM EDT
Develop your own process in accordance with the BPMN 2 standard
Learn Process modeling best practices with Bonita BPM through live exercises
http://www.bonitasoft.com/be-part-of-it/events/bpm-camp-virtual- event?utm_
source=Sourceforge_BPM_Camp_5_6_15&utm_medium=email&utm_campaign=VA_SF
_______________________________________________
Jmol-developers mailing list
Jmol-developers@lists.sourceforge.net
https://lists.sourceforge.net/lists/listinfo/jmol-developers
