once on the page, follow these steps:
(1) Select Mutation tool from the main menu:
MODEL => BUILD => Mutation
(2) Enter Modeller Key (click on it to get one if u dont have one! )
(3) Under TEMPLATE submenu, select your template (that you want to mutate):
Multiple options provided. Either upload your PDB, enter PDBID, or PDB URL.
(4) Under MODEL submenu, enter residue number and its chain ID that you
would like to mutate
(5) Under Desired mutation:
Select PROTEIN (for an amino acid change) or DNA (for nucleotide change)
that is it! it may take a couple of hours though .... just kidding. more
like a couple of seconds!
let me know if u encounter any issues, bob.
amjad
On Tue, Jul 1, 2014 at 7:34 PM, Robert Hanson <[email protected]> wrote:
> It's working now for me. Tell us about how the mutation works.
>
>
> On Tue, Jul 1, 2014 at 12:48 PM, Amjad Farooq <[email protected]> wrote:
>
>> Hi everyone,
>>
>> Here is a new web interface that may be of interest to some of you:
>>
>> http://structuropedia.org
>>
>> This is a simply yet powerful and versatile web interface with
>> capabilities for modeling and rendering of proteins alone and in complex
>> with peptides and DNA. Powered by a wide array of engines including
>> Biopython, Blast, Clustal, JSmol, Modeller, RefSense and VMD.
>>
>> Any feedback will be most welcome.
>>
>> With warmest regards,
>>
>>
>> *AMJAD FAROOQ PhD DIC | Associate Professor *Dept of Biochemistry, University
>> of Miami School of Medicine
>> *Location*: Gautier Building, Suite 217
>> *Address*: 1011 NW 15th Street #217, Miami , FL 33136, USA
>> *Contact*: [email protected] | 305-243-2429
>> *Labpage*: farooqlab.net <http://www.farooqlab.net> | structuropedia.org
>> <http://dalton.med.miami.edu>
>>
>>
>> ------------------------------------------------------------------------------
>> Open source business process management suite built on Java and Eclipse
>> Turn processes into business applications with Bonita BPM Community
>> Edition
>> Quickly connect people, data, and systems into organized workflows
>> Winner of BOSSIE, CODIE, OW2 and Gartner awards
>> http://p.sf.net/sfu/Bonitasoft
>> _______________________________________________
>> Jmol-users mailing list
>> [email protected]
>> https://lists.sourceforge.net/lists/listinfo/jmol-users
>>
>>
>
>
> --
> Robert M. Hanson
> Larson-Anderson Professor of Chemistry
> Chair, Department of Chemistry
> St. Olaf College
> Northfield, MN
> http://www.stolaf.edu/people/hansonr
>
>
> If nature does not answer first what we want,
> it is better to take what answer we get.
>
> -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
>
>
>
> ------------------------------------------------------------------------------
> Open source business process management suite built on Java and Eclipse
> Turn processes into business applications with Bonita BPM Community Edition
> Quickly connect people, data, and systems into organized workflows
> Winner of BOSSIE, CODIE, OW2 and Gartner awards
> http://p.sf.net/sfu/Bonitasoft
> _______________________________________________
> Jmol-users mailing list
> [email protected]
> https://lists.sourceforge.net/lists/listinfo/jmol-users
>
>
------------------------------------------------------------------------------
Open source business process management suite built on Java and Eclipse
Turn processes into business applications with Bonita BPM Community Edition
Quickly connect people, data, and systems into organized workflows
Winner of BOSSIE, CODIE, OW2 and Gartner awards
http://p.sf.net/sfu/Bonitasoft
_______________________________________________
Jmol-users mailing list
[email protected]
https://lists.sourceforge.net/lists/listinfo/jmol-users
