> I tested five models of a short alpha-helix in Jmol 10pre3.2 which I had > build according to your suggestions with ant clean this morning. > http://www.imb-jena.de/cgi-bin/SCOPlnk3.pl?ASK=1ale Good.
> with backbone all but the last (fifth) model where head to tail joined, :-( I understand why. > and only with this last, I was able to display a cartoon or a trace. Oh no ... these were unforseen problems. Multiple models did *indeed* have a broad impact :-( But I now understand them and will have to start thinking about it. This may take a while. > What should trace temperature do, I don't think the temperature stuff is working. I do not understand what the range of temperature values should be and how these values map to colors. Any help would be appreciated. > I think, if all models are selected, > it should represent a hypothetical mean model and the thickness should > be controlled by the deviations of the individual models present in the > file. I think I understand what you are suggesting, and it seems like a valuable way to visualize differences in the models. But, I think it will be complicated to do. There is no easy way for me to detect that all the models are selected. If we want the functionality that you are asking for, I think the best way to do it may be to introduce another type of 'trace' command. One that is explicitly designed for working with multiple models. Miguel > Regards, Jan -------------------------------------------------- Miguel Howard [EMAIL PROTECTED] c/Pe�a Primera 11-13 esc dcha 6B 37002 Salamanca Espa�a Spain -------------------------------------------------- telefono casa 923 27 10 82 movil 650 52 54 58 -------------------------------------------------- To call from the US dial 9:00 am Pacific US = home 011 34 923 27 10 82 12:00 noon Eastern US = cell 011 34 650 52 54 58 6:00 pm Spain -------------------------------------------------- ------------------------------------------------------- This SF.net email is sponsored by: SF.net Giveback Program. Does SourceForge.net help you be more productive? Does it help you create better code? SHARE THE LOVE, and help us help YOU! Click Here: http://sourceforge.net/donate/ _______________________________________________ Jmol-users mailing list [EMAIL PROTECTED] https://lists.sourceforge.net/lists/listinfo/jmol-users
