I apologize if this is a known not-yet-implemented item:

Named hetero groups can't be individually selected.

PDB file 1f88  contains heteroatoms including retinal (RET, residue 978)
and nacetyl glucosamine (NAG).

select not protein     [works in Jmol application and applet, selects
RET, NAG...]
select 978  [works in both]
select RET    [selects all atoms, including ret in Jmol applet, gives
undefined variable error in application, selects just ret in Rasmol].





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