Tom, > I am new to using jmol. I have been having trouble displaying aromatic > rings from a .mol file when using the browser applet.
There is currently not good support for aromatic bonds in Jmol. Some infrastructure is in place, but it isn't finished yet. > Sometimes bonds in the aromatic ring do not appear at all, the C atoms > appear disconnected from each other. > > When I open the .mol file, it says the bond order is 4, which I assume > is the .mol code for an aromatic bond. I was not aware that this was the notation for an aromatic bond in a .mol file. Please send me a small .mol as an example. > Any suggestions? The display of aromatic bonds is important for the > compounds I study. Understood. > A second question: Is it possible to interactively measure bond > distances and angles with the browser applet? Well, sorta. You can certainly measure these things using RasMol script commands. However, the applet does not currently have user-interface gestures to support this. It is on the list of things to do. Miguel ------------------------------------------------------- This SF.net email is sponsored by: IBM Linux Tutorials. Become an expert in LINUX or just sharpen your skills. Sign up for IBM's Free Linux Tutorials. Learn everything from the bash shell to sys admin. Click now! http://ads.osdn.com/?ad_id=1278&alloc_id=3371&op=click _______________________________________________ Jmol-users mailing list [EMAIL PROTECTED] https://lists.sourceforge.net/lists/listinfo/jmol-users
