Therefore, all newline characters are lost before they get to the JmolApplet. This breaks every format other than CML. Even CML has problems because you cannot use the < character. So, loading inline has problems.
Q: What is your primary motivation for wanting to 'loadInline'?
CaGe relies on inline loading as well, and the motivation is this: it would be inconvenient to put our graphs/molecules into a file before loading them into Jmol. Our users will spend less time looking at a single molecule, more browsing through a large set structural alternatives.
The website again: http://www.mathematik.uni-bielefeld.de/~CaGe/
Sebastian Lisken
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