> I'm new to using JMOL as an applet and I am currently > loading multiple molecules from a single CML file in JMOLApplet version > 8. I have to primary problems or questions.
It has been a while since I worked on Jmol v8. But I *think* that this info is correct. > 1. Is there anyway to make each molecules bonds a particular color > in order to distinguish them from one another? The script command you want is color bonds [255, 0, 0] # makes bonds red I honestly don't know if this works in Jmol v8 or not. I think so. You will have to try it out. If it does, then you can choose the bonds by selecting the atoms select carbon color bonds [0, 255, 0] would color all C-C bonds as lime-green > 2. Is there any functionality I can add or use that would allow me > to "turn off and on" the display of individual molecules in the group as > I'm viewing them? You should be able to select a set of atoms and then turn them off select hydrogen,carbon,atomno=1 wireframe off spacefill off > I was told by a supervisor that these things were possible in JMOL, but > I'm not seeing where or how they can be accomplished. Thanks! Again, no guarantees that these will work in v8. They will certainly work in v10 beta releases ... but we don't have CML support yet in v10 :-( Miguel > Mike Brubaker > -------------------------------------------------- Miguel Howard [EMAIL PROTECTED] c/Pe�a Primera 11-13 esc dcha 6B 37002 Salamanca Espa�a Spain -------------------------------------------------- telefono casa 923 27 10 82 movil 650 52 54 58 -------------------------------------------------- To call from the US dial 9:00 am Pacific US = home 011 34 923 27 10 82 12:00 noon Eastern US = cell 011 34 650 52 54 58 6:00 pm Spain -------------------------------------------------- ------------------------------------------------------- The SF.Net email is sponsored by EclipseCon 2004 Premiere Conference on Open Tools Development and Integration See the breadth of Eclipse activity. February 3-5 in Anaheim, CA. http://www.eclipsecon.org/osdn _______________________________________________ Jmol-users mailing list [EMAIL PROTECTED] https://lists.sourceforge.net/lists/listinfo/jmol-users
