> is there a protein PDB file which cuts a bond by the border of the
> asymmetric unit?

Jan,

My answer is ... I do not know :-)

I do not know what an asymmetric unit is. I have only seen one .pdb file
with a CRYSTL defined.


>>Q: Is there a solution to this problem?
>>
> don't cut bonds
>>Q: Within the file formats, is there a way to specify the bonding that
>> exists between cells?
>>
>>
> the bounding box has not to be inside the unit cell

Sorry, I do not know what you mean.


Miguel





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