Jan wrote:
>>>But even
>>> select [C]3:A.O5*
>>>is not working at the moment
>>>http://www.imb-jena.de/cgi-bin/SCOPlnk.exe?JMOL=264d
>>>in current RasMol
>>> select [C]3:A.O5*
>>> select C3:A.O5*
>>> select C3A.O5*
>>>all select the same expected atom.
>>>
>>>
>>
>>It is not clear to me what role the * is playing in these expressions.
>> Is it a wild-card? Or is it a ' prime ?
The reason I asked about the * is because the pdb spec says:
The asterisk (*) is used in place of the prime character (')
for naming atoms of the sugar group
> * is a wildcard only, if alone in the field, that is RasMol behavior
> select C3A.*
> select c3a.????
> both select the whole residue
> select *:A.*
> select the chain :A
> select c:*.*
> select [c]*:*.*
> select all Cytosine
> select C3A.C?
> selects the [C]3:A base carbons *.c2 *.c4 *.c5 *.c6
> select c3a.c??
> select c3a.c???
> selects all c3a carbons
All of these examples work today in Jmol. Because the * is a wildcard for
the entire field.
> select c3a.c?*
> selects the sugar carbons
This one is different. You are using the trialing * to indicate a wildcard
match within a 'field'.
It was not clear to me from reading the RasMol documentation that this
functionality was available. All the examples in the documention use the *
to specify a wildcard match for an entire 'field'.
I have filed a bug report for this.
Miguel
-------------------------------------------------------
This SF.Net email is sponsored by: IBM Linux Tutorials
Free Linux tutorial presented by Daniel Robbins, President and CEO of
GenToo technologies. Learn everything from fundamentals to system
administration.http://ads.osdn.com/?ad_id=1470&alloc_id=3638&op=click
_______________________________________________
Jmol-users mailing list
[EMAIL PROTECTED]
https://lists.sourceforge.net/lists/listinfo/jmol-users
