Robert wrote:

>>  > Specifically, the American Chemical Society now provides MOL files
>> and
>>>  other online content in the Web versions of their publications,  but
>>> it does not deliver applets to render the content.  (Maybe it
>>> should, but it doesn't.)
>>
>>(Perhaps we should suggest that they consider using Jmol :-)
>
> Actually, I've already done this.

Good.

> (I think I suggested Marvin, too,
> which is free to scientific publishers, but Jmol would be just as  good
> or better.)  The publishers at ACS, though, are novices when it  comes
> to Web content.  The first time I published a paper with MOL  files as
> EWOs (Extended Web Objects, their name for Web-only content)  in late
> 2002, I had to back-and-forth with them a dozen times before  I could
> convince them that they needed to include the MIME type of  the MOL file
> when they delivered it to the browser.  I have just
> published another paper with MOL files as EWOs, and now they have
> stripped all of the return characters from the MOL files (probably  from
> transferring them across platforms), so even Chime can't display  it
> properly.  I alerted them to the problem several days ago, and it  still
> hasn't been fixed.  :-(

:-(

> The problem is made worse by the fact that the publishing folks don't
> like to communicate directly with the authors.  They want the editors
> to act as a buffer.  Then communication ends up like the child's game
> of Telephone.  Argh!
>
> In any case, if you can convince ACS to deliver applets along with  the
> EWOs, you will have done a great service to the chemistry
> community.  Meanwhile, though, we need another solution.

This is not something that I can pursue ... I have no contacts nor
experience with them.

>>Here are my personal thoughts/comments ... in random order:
>>
>>* In general, it is extremely expensive to develop and maintain
>> plug-ins. To the best of my knowledge, there is no well-defined
>> standard Plug-in architecture (although Netscape's API is probably
>> somewhat standard). This means that plug-ins have to be developed on a
>> per platform/browser basis. This is very costly and painful, and can
>> only be undertaken by companies that have significant financial
>> resources. That is why Chime went down the toilet.
>>
>>* The Applet architecuture was designed to replace this. Everyone fell
>> in love with Applets because they were supposed to solve this problem
>> ... cross-platform compatibility and a standard interface to the
>> Browser.
>>
>>* It is possible to install an applet locally. This is called a
>> *signed* applet.
>>
>>* It may be possible for us to create a JmolApplet that could be
>> installed locally as a signed applet and would operate offline by
>> detecting the mime-type ... I do not know ... but I will put it on my
>> list of things to investigate.
>
> A signed applet would be a great alternative to a plug-in.  I didn't
> know such a thing was possible.

To date I have not pursued this very much ... I have been focusing on base
functionality and not on the delivery method.

But your justification is a good one, and may cause an adjustment in my
'priority list'.

> This morning I also sent an email to Manfred Schubert, who has
> created at least two very nice plug-ins for Safari
> (http://www.schubert-it.com), about converting Jmol to an applet.  Maybe
> you can get in touch with him and discuss the possibilities.

I will take a look at his site.


Miguel





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