>> > Therefore, it is with some reluctance/trepidation/self-conscious-fear
>> that
>> > I feel compelled to say ...
>> >
>> > 1D66.pdb is messed up.
>
> :-)
>
> When problems with "messed up" PDB entries crop up one might want to check
> the
> mmCIF version of the file to see if the problems have been corrected. PDB
> entries are "as-is" from the authors but some problems left uncorrected by
> the
> authors have been fixed by the PDB staff in the mmCIF versions of those
> entries.
>
> I have no idea if 1D66 is "fixed" or not but it might be worth a look.

Good point.

In this case, it has not been corrected.

In 1D66.cif the group numbering is different from in the .pdb file
(although this could be a Jmol bug).

In 1D66 the problem group is [c]9:b

load samples/cif/1D66.pdb
restrict none; select nucleic; wireframe;
select [c]9:b; cpk 20%


Miguel


> Rich
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