> I have a question regarding the values and the color bins.
> I understood (perhaps wrongly) that the coloring scheme is fixed,
> thus, a value of 50.00 should be colored white.

No. The 'color temperature' scale is relative, not fixed. This is for
RasMol compatibility. (although RasMol goes red->green->blue & Jmol goes
red->white->blue)

I apologize if I was not clear about this. In my message to the mailing
list on 12 Aug 2004 I said:

> The range is linearly scaled and mapped to
> the temperature values in the file.

I now see that this statement was not very clear.

also:

> ----- Original Message -----
> From: "Miguel" <[EMAIL PROTECTED]>
> To: "Yossi Shaul" <[EMAIL PROTECTED]>
> Cc: <[EMAIL PROTECTED]>; <[EMAIL PROTECTED]>
Sent: Saturday, August 14, 2004 7:18 PM
> Subject: Re: temperature scale

[snip]

>> min & max values are found to determine the range for the particular
molecule.


Now for the good news ... I am now in a position to add the 'fixed
temperature scale' functionality.

We need to come up with a name. Suggestions are:

color atoms byTempFactorValue
color atoms absoluteTemperature
color atoms fixedTemperature
color atoms temperatureFixed
color atoms temperatureAbsolute

Please let me know which one you like, or make another suggestion.


Miguel




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