-----BEGIN PGP SIGNED MESSAGE----- Hash: SHA1 On Wednesday 13 October 2004 13:06, Raphael A. Bauer wrote: > E.L. Willighagen wrote: > | On Tuesday 12 October 2004 15:08, Raphael A. Bauer wrote: > |>>As I promised in my last postings, I want to announce how > |>>our project "Columba" uses Jmol. > | > | It seems very basic use... i.e. it only displays the PDB structure. It > | would > > that's right. But I hope it can help as well.
It certainly does... > | be nice to have buttons as well that color for example the active site, > | though I do not know wether that info is in one of the integrated > | databases... > > That could be future work, because we cannot easily map this information > into the 3D coordinates. No, but they do often given the residue which participates in the active site, correct? And you should be able to give a script command to select just those amino acids (or even just the side chain part of them), and highlight them with red or so... (can anyone help with the script commands for that? (where was the online documentation again?)) > |>>In general our project, the www.columba-db.de is a > |>>data integration project, aiming towards the integration of > | > | I'm no expert in bio databases, but I think there are other systems that > | integrate several databases... SRS is one, right? What does Columba offer > | over already existing solutions? > > That is a point. Our system is a research system, that is built onto > a completely relational database, dealing heavily with schema mappings and > the data quality. All these issues have a strong computer science aspect, > we wanted to mention and to research. > And of course our system is used by biochemistry people > that give us feedback about the qeueying, the data etc... > The querying compared to SRS is as well much more simple and powerful. And > imo SRS cannot integrate Scop and Cath. (But this discussion could be a bit > OT). Thanx for this explanation... > |>>If you want to use code of the project or want to know how we did this > |>> or > | > | What's the license of the website source code? > > It's the Python license (it's almost like the BSD license). Ok, thanx for that too :) Wild thought... what about using Jython, and intergrating the website source code into a Jmol plugin :) Egon - -- [EMAIL PROTECTED] - --------------------------------------- CDK: http://cdk.sf.net/ JChemPaint: http://jchempaint.sf.net/ Jmol: http://www.jmol.org/ -----BEGIN PGP SIGNATURE----- Version: GnuPG v1.0.7 (SunOS) iD8DBQFBbRBMd9R8I9Yza6YRAo79AJ9tpewTve/F8XZPZ6O0+n+SwJuKiACbBRHg KY4b2UaJP2NjZeQro6HDTYI= =mBmP -----END PGP SIGNATURE----- ------------------------------------------------------- This SF.net email is sponsored by: IT Product Guide on ITManagersJournal Use IT products in your business? Tell us what you think of them. Give us Your Opinions, Get Free ThinkGeek Gift Certificates! Click to find out more http://productguide.itmanagersjournal.com/guidepromo.tmpl _______________________________________________ Jmol-users mailing list [EMAIL PROTECTED] https://lists.sourceforge.net/lists/listinfo/jmol-users
