Ola wrote:
> Let's say I have a JmolViewer in a panel and a CDKmolecule like this:
>
> JmolViewer viewer;
> CDKMolecule mol2;
>
> How do I load the molecule in the viewer?
I don't remember all the details right now, but here are some things for
you to investigate ...
When you create the viewer you need to pass in a ModelAdapter. This
ModelAdapter provides an API that Jmol uses to query the model.
In your case, you need to pass in an instance of
org.jmol.adapter.cdk.CdkModelAdapter
Once you have your cdk model in hand, you need to call
JmolViewer.openClientFile("fullPathName", "modelName", mol2);
Miguel
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