Petr wrote: > Trying "renumber x" in the Rasmol Scripts console results in Script > command not implemented: renumber.
True, that is not implemented. A year ago when I was working on the scripting engine I did not understand how it worked, and noone has asked for it. > Cannot find any replacement functionality in the docs. This is relatively > important function for transferring sequence analysis into 3D picture. Please explain ... I do not understand what you mean. > PDB files unfortunately sometimes contain numbering that starts not where > one would like to so it is painful to re-calculate everything to the new > indexing. > renumber was an easy remedy for that - any suggestions how to do that? I now understand that the residue sequence numbers are often not sequential, and that insertion codes add to the complexity. I can probably implement 'renumber' ... but the idea of changing the raw data makes me nervous ... I fear it will have unforseen repercussions. So first ... I do not understand what the value of 'renumber' is. It seems to me that it would break all of the scripts associated with that .pdb file. Q: What is the benefit of using 'renumber'? What are you trying to accomplish? Miguel ------------------------------------------------------- SF email is sponsored by - The IT Product Guide Read honest & candid reviews on hundreds of IT Products from real users. Discover which products truly live up to the hype. Start reading now. http://productguide.itmanagersjournal.com/ _______________________________________________ Jmol-users mailing list Jmol-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/jmol-users
