Todd wrote:
>>Q: Are these lines at the very top of the file?
>
> Yes. lines two and three in the cif. Here are the first four lines in
> the cif:
> data_something_I
> _audit_creation_date 2003-04-30
> _audit_creation_method 'Materials Studio'
> _symmetry_space_group_name_H-M 'R-3'
>
> I altered the first line slightly, it had a label that we don't want to
> disclose.
Understood.
> I just replace every single quote with a space before I call
> jmolAppletInline and Jmol now works fine.
Bad news ... I am not able to reproduce this problem.
I added these lines to the top of a file, but it loads fine.
A quick review of the source code turned up nothing. The sample files that
I use all have single-quoted strings in them ... seemingly equivalent to
what you have ... so I do not see where the problem could be.
Please do the following:
1. Try loading your cif file using the Jmol application instead of the
Jmol applet. The Jmol application is called Jmol.jar. You can run it by
saying:
java -jar Jmol.jar
Open up stdout by saying Help->Console
File->Open {your-file.cif}
If it dies, there should be a stack dump to the console.
Please report results and first 4 lines of stack dump (if any)
2. Open the Java console in your web browser. Depending upon your browser
it will be in different places. In a corporate environment you are
probably using IE.
If you are running with the MSFT JVM then you will go to
Tools -> Internet Options -> Advanced -> Microsoft VM -> Java Console
Enabled
Then close all instances of IE and start again.
If you are running the Sun Java Plug-in then (as I recall) the process is
quite similar.
Then load up your .cif file. Tell me what results you see in Java console.
Miguel
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