Petr wrote: > Suggestions: > > Strongly advocate for being able to label polymers by residue/monomer > strings/indices via <label> menu that one gets by right click. More > "user-friendly".
OK > Currently, to get amino acid labels on protein structure requires "lots of > work" on console (:-)) : > <select carbon and backbone and alpha> <label %n%r> You are overspecifying your query criteria. The following will give the same results: select alpha; > If one renders via<Render> <Structures><something> and then changes > her/his > mind and repeats the <Render><Structures><something else>, the previous > rendering remains, so one generates overlay of the two renderings. > To get the "pure" second type, one needs to switch the Structures > rendering off and re-enter the new one. Yes. Your observation is correct. > The coloring schemes of those different types implemented "sequentially" > behave in funny, i.e. non-systematic way. Sometimes they "inherit" the > color scheme of the previous (e.g.Trace from Cartoon), sometimes one needs > to re-enter the required color scheme. None of those should inherit. Each of those shapes has independent color control. If something seems to be inheriting then something must be coloring the atoms instead of the shape color green instead of color <shape> green > <Structures><backbone> does not behave as <trace> or <cartoon> e.g. once > it > is implemented, it does not go "off", so "to get rid of it", one needs to > change to <render><scheme><wireframe> and then back to whatever is > necessary.... OK > Needless to say that sometimes having the overlay of cartoon with > backbone > is useful, though. OK Petr, Thanks for taking the time to identify these problems. The menus are implemented as normal script commands. The script source can be found in org/openscience/jmol/ui/JmolStructure.properties Tim, can you take a look at these things? Miguel ------------------------------------------------------- The SF.Net email is sponsored by: Beat the post-holiday blues Get a FREE limited edition SourceForge.net t-shirt from ThinkGeek. It's fun and FREE -- well, almost....http://www.thinkgeek.com/sfshirt _______________________________________________ Jmol-users mailing list Jmol-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/jmol-users
