Hi, Albion
At 1/20/05, you wrote:
I have generated all the symmetry mates for a Rhinovirus though. This has about twice as many atoms as a ribosome (376k atoms). If anyone is interested let me know and Ill send you the file to experiment with. It is a kind of a pain to generate all the symmetry mates from the PDB they provide (4RHV).
EBI's Probably Quaternary Structures site generates full virus capsids automatically. For more info and some examples (most stripped down to alpha-carbons only) please go to proteinexplorer.org, click on Atlas of Macromolecules, Viruses, or go directly to
http://molvis.sdsc.edu/atlas/atlas.htm#virions
and if you have Chime, don't miss this rotatable capsid of SV40 simplified to 360 "atoms" (one per protein chain) with a superscribed icosahedron.
http://molvis.sdsc.edu/pdb/sv40_360.htm
Maybe you'd like to adapt that page to jmol? It might be an interesting test of jmol Chime-compatibility.
- ////// Eric Martz, Professor Emeritus, Dept Microbiology Univ Mass, Amherst. Formerly taught: Infectious Disease and Defense 320 (fall): www.bio.umass.edu/micro/courses/infdisdef.html Immunology 540 (spring alternate years): www.bio.umass.edu/immunology/mic540hp.html Immunology Lab 542 (spring): www.bio.umass.edu/immunology/mic542hp.html Macromolecular Visualization Lab 597V (fall): www.bio.umass.edu/micro/courses/molvis.html Immunology Journal Club 797J (both semesters) www.bio.umass.edu/immunology/ijc.html Immunology at UMass Amherst: www.bio.umass.edu/immunology //////
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