Miguel,

Here are the only current deviations between PyMOL and Jmol colors:

RGB

Hydrogen
  0.900 0.900 0.900   0xFFE5E5E5

Carbon
  0.200 1.000 0.200   0xFF33FF33

Nitrogen
  0.200 0.200 1.000   0xFF3333FF

Oxygen
  1.000 0.300 0.300   0xFFFF4C4C

Flourine
  0.702 1.000 1.000   0xFFB3FFFF
 
Sulfur
  1.000 0.500 0.000   0xFFFF7F00

Cheers,
Warren

--
Warren L. DeLano, Ph.D.                     
Principal Scientist

. DeLano Scientific LLC  
. 400 Oyster Point Blvd., Suite 213           
. South San Francisco, CA 94080    
. Biz:(650)-872-0942  Tech:(650)-872-0834     
. Fax:(650)-872-0273  Cell:(650)-346-1154
. mailto:[EMAIL PROTECTED]      
 

> -----Original Message-----
> From: [EMAIL PROTECTED] 
> [mailto:[EMAIL PROTECTED] On Behalf Of Miguel
> Sent: Thursday, February 03, 2005 11:40 AM
> To: [email protected]
> Subject: Re: [Jmol-users] RE: [PyMOL] Default colors by element
> 
> 
> > Note also that PyMOL beta versions now match Jmol's colors 
> > element-for-element except for those few atomic colors previously 
> > defined in PyMOL (just C,N,O,H,S -- I think)
> 
> For backwards compatibility with RasMol/Chime, Jmol supports 
> the command
> 
> set defaultColors rasmol
> set defaultColors jmol
> 
> Warren, send me the RGB values for C,N,O,H,S and I will implement
> 
> set defaultColors pymol
> 
> 
> Miguel
> 
> 
> 
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