Hi I run a search for this in the list and there is plenty of discussion around feb.04, but I cannot manage to get hold of a conclusion, so I am posting here. The problem: i I open a PDB file in Rasmol/Chime and apply certain rotations (some times also translations) to get a view, then save the script and apply it to Jmol, the orientation I get of the molecule is different. Sometimes, a simple "rotate x 90" or "rotate y 90" fixes it (so I guess it has to do with the discussed problem of Y axis orientation), but other times the originally intended Rasmol orientation is very difficult to obtain. Can anybody summarize how to fix the different orientation in Jmol and Rasmol? I am trying to port existing tutorials into Jmol. Thanks for any clue
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