Nico wrote:

> 2. Someone has a suggestion on a format for the
> description of the molecule structure ?

Rather than use the word 'molecule' I think that perhaps we should use the
phrase 'substructure'

I would think about this problem as a substructure search based upon a
SMILES pattern as the input specification. That may not be the most
powerful way to represent network subnets, but it is certainly one of the
most practical for chemists.

I think there is code for substructure searching in CDK that is worth
taking a look at.


Miguel



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