[Jmol-users] color bonds not atoms

[Brandon Hespenheide]

Hello,             I was wondering if there is a way to color the bonds of the structure instead of the atoms. We have an application where we determine flexible and rigid regions in biomolecules. The results tell us which bonds are rigid (can’t rotate) and which bonds are flexible (can rotate). Since an atom can be incident with both rigid and flexible bonds, we often have “half” colored bonds, as most graphics programs require that information be mapped onto the atoms, not the bonds.   Brandon