Hi All, Sorry for the delayed response to this thread. But I wanted to register an amen with respect to the feature request for arbitrary multiple model display. That is, as indicated by Bob Hanson, some command syntax such as
model 1,2,[4-7],14 whereby a specific arbitray list of models from among a larger loaded set can be simultaneously displayed. The use case for me is display of a bound protein ligand complex, in some cases including energy-minimized and un-minimized models for each. Visualization of the geometry optimization would be greatly enhanced by this kind of control. -Jeremy. Jeremy J. Yang VP, Support Openeye Scientific Software On Wed, 18 May 2005, Bob Hanson wrote: > Ah, OK, I missed that. You actually WANT to see all the rotomers. > Sure. I was just using > > model 1 > model 2 > etc. > > so I was just seeing the individual parts. > > I thought maybe you wanted to see the individual rotomers one by one; > maybe animate them to see them sequentially, that sort of thing. > That, it seemed to me, would require something like > > model 1,2; select not 155; > > The reason I asked if this were possible is that I thought I remembered > a discussion about this some time back -- the desire to be able to > compare two specific models of a larger set simultaneously. Obviously > if we can do "model all" then in principle we could do "model 1,2", but I > don't know if that was ever implemented. Or requested. > > Bob > > > Joost Van Durme wrote: > > >>Joost seems pleased with seeing the rotomer by itself without > >>the rest of the protein. > >>Joost is not creating standard PDB files. Nonetheless, was it ever made > >>possible to display two specific models at the same time? If so, that would > >>>obviously be a solution, but > >>I can't remember if you can do that. > > > > > > Mmm, I think you're missing something, Bob. > > I do see all rotamers and the rest of the protein. > > I just do "select *, model all; wireframe on;" > > Everything is there .... > > > > Don't you see it nicely at > > http://iri-pc87.ulb.ac.be/sample/sample/test_jmol.html ? > > > > Joost > > > > > > ------------------------------------------------------- > > This SF.Net email is sponsored by Oracle Space Sweepstakes > > Want to be the first software developer in space? > > Enter now for the Oracle Space Sweepstakes! > > http://ads.osdn.com/?ad_id=7412&alloc_id=16344&op=click > > _______________________________________________ > > Jmol-users mailing list > > [email protected] > > https://lists.sourceforge.net/lists/listinfo/jmol-users > > -- > Robert M. Hanson, [EMAIL PROTECTED], 507-646-3107 > Professor of Chemistry, St. Olaf College 1520 St. Olaf Ave., Northfield, MN > 55057 > mailto:[EMAIL PROTECTED] http://www.stolaf.edu/people/hansonr > > > > > ------------------------------------------------------- > This SF.Net email is sponsored by Oracle Space Sweepstakes > Want to be the first software developer in space? > Enter now for the Oracle Space Sweepstakes! > http://ads.osdn.com/?ad_id=7412&alloc_id=16344&op=click > _______________________________________________ > Jmol-users mailing list > [email protected] > https://lists.sourceforge.net/lists/listinfo/jmol-users > ------------------------------------------------------- This SF.Net email is sponsored by: NEC IT Guy Games. How far can you shotput a projector? How fast can you ride your desk chair down the office luge track? If you want to score the big prize, get to know the little guy. Play to win an NEC 61" plasma display: http://www.necitguy.com/?r=20 _______________________________________________ Jmol-users mailing list [email protected] https://lists.sourceforge.net/lists/listinfo/jmol-users
