Miguel, can you tell us the PDB code, please?
I will be happy to send this question to 4 crystallographers that I know
personally for their opinions, and forward their replies to jmol-users.
-Eric
At 6/7/05, you wrote:
We have a file representing a protein in a single chain. It contains a set
of common atoms identified by alternate location ' '. There are also some
atoms identified by alternate locations 'A' and 'B'.
There are two separate 'runs' of alternate location atoms. Somewhere near
the beginning of the chain there is a set of 'A' atoms and an alternate
set of 'B' atoms. Somewhere near the end of the chain there is another run
of A/B alternates.
Q: Is it the case that these two separate 'runs' of 'A' alternate
locations are paired together? That is, does one generally think of these
two runs of 'A' altLoc atoms go together?
Q: Or, is it the case that the first 'A' run and the second 'A' run are
generally considered independent of each other, and that one is just as
likely to couple the first 'A' run with the second 'B' run?
Miguel
-------------------------------------------------------
This SF.Net email is sponsored by: NEC IT Guy Games. How far can you shotput
a projector? How fast can you ride your desk chair down the office luge track?
If you want to score the big prize, get to know the little guy.
Play to win an NEC 61" plasma display: http://www.necitguy.com/?r
_______________________________________________
Jmol-users mailing list
[email protected]
https://lists.sourceforge.net/lists/listinfo/jmol-users
/* - - - - - - - - - - - - - - - - - - - - - - - - - - -
Eric Martz, Professor Emeritus, Dept Microbiology
U Mass, Amherst -- http://www.umass.edu/molvis/martz
Protein Explorer - 3D Visualization: http://proteinexplorer.org
Workshops: http://www.umass.edu/molvis/workshop
Biochem Structure Tutorials http://MolviZ.org
World Index of Molecular Visualization Resources: http://molvisindex.org
ConSurf - Find Conserved Patches in Proteins: http://consurf.tau.ac.il
Atlas of Macromolecules: http://molvis.sdsc.edu/atlas/atlas.htm
PDB Lite Macromolecule Finder: http://pdblite.org
Molecular Visualization EMail List (molvis-list):
http://bioinformatics.org/mailman/listinfo/molvis-list
- - - - - - - - - - - - - - - - - - - - - - - - - - - */
-------------------------------------------------------
This SF.Net email is sponsored by: NEC IT Guy Games. How far can you shotput
a projector? How fast can you ride your desk chair down the office luge track?
If you want to score the big prize, get to know the little guy.
Play to win an NEC 61" plasma display: http://www.necitguy.com/?r=20
_______________________________________________
Jmol-users mailing list
[email protected]
https://lists.sourceforge.net/lists/listinfo/jmol-users
