Thanks to all who made suggestions.
I have made some changes and published
http://www2.uah.es/biomodel/jmol/radii/jmol_radii.en.html
a "version beta2" in which:
1) Background color:
"white" background is now a pale grey-yellow (best I could find to
keep visibility of both white and black text). [following Nicolas and
Rolf]
2) "Labels on/off" checkbox:
its state now varies accordingly with what is done by clicking other
buttons. [Rolf]
I could not make it perfect (keeping the current 'labels on' state
when choosing VdW or Atomic) because of some weird interference
between jmolscripts and form javascripts; I've given up.
(Technical, just in case anyone is interested or has seen it before:
inserting alert("hello") makes code work, removing it makes
not to work; seems as if the flow of Jmol code is interrupted,
the script is not finished and subsequent actions behave
unpredictably. I tried the Java console but saw nothing.
3) I reorganized Y- and Z- coordinates in the PDB to have the whole
set more centered and square (cubic, in fact), and to give more space
between rows of atoms (periods), so better allowing for the labels on
top of each atom.
4) Labels position:
I have decided on "set labeloffset 0 1", the label above the atom.
I had some problem with "set labeloffset", which was failing unless
applied twice; now I have found out that --in a script-- it must be
issued after a first "label" command, not before it.
In the console, it works when issued before.
5) "Show period 7 only" is now available (was unnoticedly omitted in
previous version)
6) Text layout has been compartmentalized. [Tim]
7) Upgraded to Jmol 10.00.35 --"hover" now works as intended from the
beginning, showing atomic nr. and element symbol, so less need for
labels on.
8) Most important for me (Eric, I guess you will like it too):
I found code that allows an applet div fixed and a content div (for
text+controls) with scrolling, full-height, not absolute pixel
measure. It works in Firefox 1.0.4, Netscape 7.0, IE6, IE5.5
(Windows).
Derived from http://tagsoup.com/-dev/null-/css/fixed/
For the future, I will try to set-up a template with it (the radii
page is very complex to copy from).
Pending tasks:
- setting the center of rotation to the set of atoms shown. (for
beta3)
- [Tim] show the actual radii values in a popup alert
Too much for me, I'm afraid. I haven't yet tried the callback stuff.
That would mean anyway reading the values from the java file and
writing them into JS variables, at which point I would just build the
table into the page text.
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