Thanks, Eric. That's much better. See now
http://www.stolaf.edu/people/hansonr/jmol/docs
Eric Martz wrote:
Dear Bob,
Here are some suggestions for the Jmol command manual:
-------------------------
Under set (visibility), set solvent,
PRESENTLY SAYS
Turns on and off display of solvent "probe" that can be displayed using
dots. The radius of this probe is set with set radius (above). After set
solent ON, you must (re)issue dots ON for it to take effect.
REPLACE WITH
When set solvent is ON, a subsequent dots ON shows the surface of the
aggregate of selected atoms, using dots. This surface is defined by the
contact of a spherical probe (representing a solvent molecule) rolled
over the surface of the selected atoms. The radius of the probe sphere
is customarily 1.4 Angstroms, which approximates a water molecule. Note
that the default radius for Jmol is 1.2 Angstroms. The radius of the
probe is set with set radius (above). (More information on molecular
surfaces: http://www.netsci.org/Science/Compchem/feature14.html ) After
set solvent ON, you must (re)issue dots ON for it to take effect.
----------------------------
Under 'dots':
PRESENTLY SAYS
Turns dotted surface on or off for Van der Waals radii or solvent probe
(if in addition set dots ON).
CORRECTION:
Change next to last word from 'dots' to 'solvent', so it ends 'set
solvent ON'.
(There is no 'set dots ...' command.)
-Eric------------------------------------------------------- This SF.Net
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--
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Robert M. Hanson, [EMAIL PROTECTED], 507-646-3107
Professor of Chemistry, St. Olaf College
1520 St. Olaf Ave., Northfield, MN 55057
mailto:[EMAIL PROTECTED]
http://www.stolaf.edu/people/hansonr
"Imagination is more important than knowledge." - Albert Einstein
-------------------------------------------------------
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