> Miguel, do you know if I can get the main missing informations from the
> Reader in the readAtomSetCollection() method :

I do not really understand the question.

> - which file is currently being read (especially to have its path)

The readers do not read the information from a file. Instead, they only
read from a BufferedReader.

For example, the molecular model may be read from a String ... as with
loadInline.

> - FileManager (to convert a file name to a Stream)

The file manager has code to do this.

In general, the code in the FileManager is ugly and I am not very happy
with it.

> - Adapter

The adapter has no concept of files.
For example, the adapter may be reading memory from another in-memory data
representation of the molecule, as with the CdkJmolAdapter.


Miguel



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